DreINT0074574 @ danRer10
Intron Retention
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45643490-45643861:-
Coord C1 exon
chr2:45643706-45643861
Coord A exon
chr2:45643599-45643705
Coord C2 exon
chr2:45643490-45643598
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
GGAGAATGTGTTTCCTGCAGAAT
3' ss Score
5.79
Exon sequences
Seq C1 exon
GAGAGCTCTACAGATAGCCCGACAGCTGAAGGATCTGGCGGTGGAGGCTCAGGCCTGCTACAGTCTGGGTAACACATACACACTAATGCAGGACTTCGAGAGAGCCATAGACTACCATCTCAAACATCTCATCATCGCTCAGGACCTCAATGACAG
Seq A exon
GTGCTCTGACACAATCATATTTGTAGAATATTTAAGTGTTAATTGCTGATAATAAAAATGGAGTGTGATGGCATTCGCAATAATTATGGAGAATGTGTTTCCTGCAG
Seq C2 exon
AATCGGTGAAGGCAGGGCCTGCTGGAGTTTAGGGAATGCACATACAGCATTAGGCAATCATGACCAAGCTATGCACTTCGCAGAGAAACACTTGGAAATCTCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311:ENSDART00000024034:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
NA
C2:
PF134241=TPR_12=PU(58.2=86.5)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGATAGCCCGACAGCTGA
R:
CAAGTGTTTCTCTGCGAAGTGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]