RnoINT0067140 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211504469-211506372:-
Coord C1 exon
chr2:211506217-211506372
Coord A exon
chr2:211504578-211506216
Coord C2 exon
chr2:211504469-211504577
Length
1639 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
AATTTTGAATTCTGTTTTAGAAT
3' ss Score
8.45
Exon sequences
Seq C1 exon
GAAGACACTGCTGCTGGCTCGGCAGCTGAAAGACAGAGCCGTGGAAGCTCAGTCCTGCTACAGTCTTGGGAATACATACACTCTGCTTCAGGACTACGAGAAGGCCATCGAGTACCACCTCAAGCACTTAGCGATTGCCCAGGAGCTCAAGGATCG
Seq A exon
GTGAGTTCCACACACGCCCTGCTCCGAGTTCTGGTGAATGCAGGTGCACTATGAATTTTGGCTTCTCCTGGGCCTTTCCATTTGTCCCTTCCTGAGAAGGAGTGAGTGTCCTGCTCGATGAGCCTCCGTGCACATTATTCTTTTTTTAATTTATTTTATTTTATGTACATTGGTGATTTGACTGCACGTATGTCTGTGTGAGGGTGGTGGATCCACTGGAACAGGAGTTACAGACAGTAGTGAGCTGCTCTGTGGGTGCTGGGTCCTCTGGAAGAGGACTCTTACCCGCATGTTACCGTCTTAAGGGCCAGCCTCTGGTGGAGGATTAGTGGGGAAGCATGGGACTTTGAGTATGAATGAGTGACTAACTAGGTCCCAAGCTCAGCTGCCTTCCCAGAAGTCGTCCTGTGTAGCTCACTGTGGGCGTTGCAGAGGACTCAGATGATGCTGAGGTCAAGGGATACATACCTGCTGCTCAGCTCGAATGTCCCCTGTGGGGAACATGGCTCCTCAGGAGAAGTTAGGAGTCCTGAGGTAGACTCTGCCCGTTGAGTGGTGGTGACTAAGTCGATTGCTTTGGTTCTTATTTATTTATTTATTTTTATTGTTTTTCTCTTGACGAAGAACATCTATGGAGTACTGGTCTGTAATATTTACTTGAGAAGATAGATTTTTACCTCACTGTGAGAAAGAACTTTTCAGTGTAGTTATTCAAAATGAAGTATACTACTACGTCAAGATGCAGGGAAGGAGTTTTGCTAGCTGCTCCGACCCCCATTCCTGGGCTCAAACTACACTGAATGCTTACTGATAAGGCCGTAATAGAAAGATAATGTGGTTAGGATGCAAGTCCTCACCCTGAGGTTTGATGTTTCATGATGCAGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGCGTGTGGGTGGTGGTGGTGGTGGTGTTATGAGACAGACCTCTGTAGCCCTGGCTCTTCTGAAACTCACTGTGTAGACCAGGCTAGCCTCAAACTCAGAGATTGGCCAGCCTCTGTCCCCTGAATGCTGAGATTAAAAGTCTGTCTACTGTGTTTTTTTTTTTTTTAATTAACTTGAGTATTTCTTATTTACATTTGATTATTATTCCCTTTCCCAGTTTCCGGGCCAACATCCCCCTAACCCCTCCCCCTCCCCTTCTTTATAGGTGTTCCCCTCCCATCCTCCCCCCATTACTGCCCTCCCCCCAACAATCACGTTCACTGGGGGTTCAGTCTTAGCAGGACCAAGGGCTTCCCCTTACTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCTCTCTACCACTGAGCTAAATCCCCAACCCCCTTACTATGTATTTTTAAAGGATCTTTCCATGTATTAATATTTGACTTTAAATTTGGTACTCAGTGTTGTCATTCCTCCATCTAGACTCCTCATTGCTATAGCTTAGTAAAGGTTAAGTAAGCCCGAAGCACGCTTTATACCTTTAATTATTGCTAGGTGATCTCTTTTCAGATGACTCCATGTTAATTTTGAATTCTGTTTTAG
Seq C2 exon
AATTGGTGAAGGGAGAGCGTGTTGGAGTTTAGGAAATGCATACACGGCTCTAGGAAATCATGACCAAGCAATGCATTTTGCTGAAAAGCACTTGGAAATTTCAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(60.8=90.6)
A:
NA
C2:
PF134241=TPR_12=PU(55.2=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACTGCTGCTGGCTC
R:
CTCTCTTGAAATTTCCAAGTGCT
Band lengths:
265-1904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]