DreINT0077338 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58608553-58612316:+
Coord C1 exon
chr6:58608553-58608697
Coord A exon
chr6:58608698-58612199
Coord C2 exon
chr6:58612200-58612316
Length
3502 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TGTTTATTTTCTTTCTTCAGTTC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GTCATCTCCTACATCTCCGAGACCATCTTAAACCTCTCCGGGTCTACAGTGATCAGATGGAGATGTTGGAGTTTCCGTACCCAGGCTGCAATCTGAAGCTGTCGCGTAACTCTAAAAGAGGAGAAAAACCCAACACTGAGCTCAG
Seq A exon
GTATTTGACAAATGCTGTCCATTGAGTGTAGATACAAAACACCAGTGTAATATATATATTCAGGGCCGGAGTGGGACTCCTTTTCAGCCCTGGAGTTTCAAGCCTCAGACCGGCCCACCTCAGTTCATGACAGAGTATATTAAAATAAGGTCATTTCCAATTCAGTTTCTAATGACACTATCACGTCTTTTTTTGAGAAAACAGCTGCTTTAGAACTTCAAATGTTCAACAACCCTTGCAGTATTATATGTCTTAACTCTTAACAATAAAAATGTAAAAAATAACATACTCAAAAGAGGAACAAACCCAGGTCGGCGGCATTTTAATCTAACTTGTTAACCACTAGACCACAACAGTTGTATAGTGAAAGGTGACTCTTCTGAGTTATATCATCATTAACCTGCAGGCTGGTTATATATAAAAAGAGCAGAGCTGCAGTAAAATAATGAATAAGAAGACTGTGGTCAAGTAAATAAATAAATTAATTTAAAAAGTGTGACTGCTGAGAGCAACCGATTCTGGAGCTAGGAACACCGGCCCTCAAGGCCAAAAAACGGACCGGCCCACCGGGAATTCTCCCAGTCCTCCCGATTAGCCAATCCGGGCCTGTATATATTTGTGTGCAGAGATTTCAATTTAATTCAAGTTTATTTGTACCTGTATAGTGATTTTCACAATGACAATCATTCCAGTGCAGCTTTGCAAAAAGTGTGCGTTATTACATTACAATCGTAATCAAAAGCGAAGTGGGCTTTACAGCTATCAGTTGTACAGCAGCATAGTTAAATGCACAGTTAAGGAAAATAATGTCCTTTTTGAAGGAATGACAATATACACAGTTGAAGTCAGAATTATTAGCCCCCCTGTTTATTTTTTTTTCCCAAATTCTGTTTAACGGAGAGCAGATTTTTTCAAAACATTTATAATCATAATAGTTTTAATAACTCATTTCGAATAATGGATTTATTTTATCTTTGTCATGATGACAGCACATAATATTGGACTAGATATTCTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTCACTAGGGTAATTAGGCAAGTTATTGTATGATGATAGTTTGGTCTGTAGACTATCAGAAAAATATATATAGCTTAAAGGGGCAAATAGTTTTGACCTTAAAATGGTGTTTAAAAAATTAAAAACTGCTTTTATTCTAGCCAAAATAAAACAAATAAGACTAATAAGAAAAGAAGAAAAAACATTATCAGACATACTGTGGAAATTTGCTTGCTCTGTTAAACATCATTTGGGAAATATTAAAAAAATACAAATAAATTTAAATTTATAATCATGATTATAAATGTTTTTAAAAAATCTGCTCGTTAAACAGAATTTGGGGAAAAAAATAAACAGGGGGGCTAATAATTCTGACTTCAGCTGTATACACTGACAAAAGTCTTGTCGTTGATCCCACTTGTAAGAGCAACAAATAATAACTTGACTTCTAGATCATTTGGACAAGTGGCAGATTTTTGCAACTAAATATATGTTGATCTGCATTCCAATCATCTCAGATTCTCACAGAAATCAGTCAAGTTTAGTGTAGGAGAAATCATGGTTTGGCGTTACATTCAGTATGGGGGCGTGCGAGAGATCTGCAACATCAACAGCCTGAGGTATCAAGACATTTGTGCTGCCCAAACCACAGGAGAGGGACAATTCTCCAGCAGGATAGCGCTCCTTCTCATACTTCAGCCTCCACATCAAAGCTCCTGAAAGCAGAGATGGTCAAGGTGCTGCAGGATTGGCCAGCCCAGTCACCAGACATGAATATTATTGAGCATGTCTGGGGTAAGGAGAAGGAGGAGGCGTTGAAGATGAATCTAATGACTCTTGATGAACTCTTGGAGTCCTGCAAGAACGCTTTCTCTGCCATTCCAGATGACTTTATTAATCAGTGATTTGAGTCATGTCAGAGATGTATGGATGCAGTCCTCCAAGCTCAAGATGGAGTCAGACACAATATTCATTCTGTCTCCACTGCAGCAGGACTTTATATTCTATACTGGACATTATTTCTGTTTAGTCACAAGACTTTAGTCTAAGTAGAGACAGACCTTACTAATGAAATCATTTAAAATCAAGGCATGATCAGATTTCATTGTGCTCAAATAAGCAAAATCTAGAGCAGTGGTTCTCAACTGGTTTGGCCATGGGACCCACATTTTTACATGGTCATCAACCCACAACTAACTATAATATAATTTTAGTAATTATAATTAATTTGTATTTATTTGTTAACATAAAGTAGTGACAGATAAATCATAAGAAAATCACCAAGACTTACAAATAAACACTGGTCTATTATTGTCATTTAACAAAACGTCTCAAATTATAGAAATATTACAAAGTAAAAATGACAAATGTTTGGTTTCTAAAAGTGCTCTTGTGAGCACACATTACTACATATAACACTGAGGCTTTAAGTCTTTTTTGTCGTCAATATATGTAAATCCATATTTACATATTCGGGTTCGTTTTTGCGCTTCGACATATTTGTTGCTACAATTAAATGAAATTTCACATGTCAAACGGTACAGTTGTAGCTCGGGCATTTCAAAATAAAAGTCTTGTATAAGCAAAATAAGGGAAAAACTAAACATTTGTTGTTTTTTTTGAACACATACTCTGCGACCCACTGAAAATGTTCCCGCGACCCACTTTTGGGTCACTGACCACTTTTGGGTCAGTTGAGAAACACTGATCTAGAGGCCTTTGCCTTTCATATAAGACACTTCTGATACCAAATGATAAAATAGAAGTCAAGGTATTATTATTTGTTGTTCCTAAAACTTGGATAGGCCACAAGACTTTTGTCAAGTAGTGTACAAGTAAAAACAAAATTAGTTTATTATTATGATAAATGCTGTTTAACACAGAGATTTTTTATGCATTTTAAAAATAGAATTGTCTTTGCCACTATGACAGAATTTACTGGTTATGTTGCAACCAGTATTCAGCTTAAAGTGACATTTAAAGACTTAACTAGGTTAATTAGGTTAACTAGGCAGGTTGTGTTAATTAGACAAGTCTTTGTGACAACAGTAGTTTGTTCTGTAGAAAATCAATATATATATATATATATATATATATATATATATATATATATATATATATATTCCTAATGGGTCTAATAATATTAACCTTAGCAGTTTTTACTTGTTTTTGATATTTAGCTTTTTATTCCAGCTAAACTAAAAGAAATAAGACTTTCTCCAGGAGAAAAATACAATAGGAAAAATTAATAATTACAACTTTAATAGTTAAAATTTAATAAAACTGTACTTTAAAAAAAAAATTCTTCCACTGTCTTTTTTCCAAATAATGAACTGATTGCTGCAATACTGAAGAACATAATTTTGTGTACTGATTAAGTTTGTGATGTCCTCAAAGTCATCACAAGGTTGTTTAATTAATGATTTAAGCCTTTATTTTCAGTAAAATATGTTTATTTTCTTTCTTCAG
Seq C2 exon
TTCCATTGCCTTACACCATCTGATTCGAAAGGAGGGCAACCCATTCTCCACACAAATACGTGCTTTTGATATGAAAGTCCAAAGAGGAGATCAACTCACTGATGAAGAAAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(20.0=100)
A:
NA
C2:
PF130861=AAA_11=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]