HsaINT0131706 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr20:62192703-62193098:-
Coord C1 exon
chr20:62192954-62193098
Coord A exon
chr20:62192820-62192953
Coord C2 exon
chr20:62192703-62192819
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CACTGTGTCCTGTCCCCCAGGAG
3' ss Score
10.47
Exon sequences
Seq C1 exon
GACTGCTCCTGAGAAGGATGGAGCTGAAGCCCCTCCGTGTGTACAGTGAGCAGGCTGAGGCCAGCGAGTTCCCAGTGCCGCGTGTGGGCAGCAGGAAGCTGCTCAGGAAGAGCCCCCGGGAGGGGAGGCCGAACCAGAGCCTCAG
Seq A exon
GTGTGCCTGCTGTCTTTGGGGCTTGGGCGGAGTGGGGCCGAGCTGTCCAGACAGTCCTGTGTAGGTGGGTCTCACTGAGCTCTGCCCCCGTGATGGCCCTGCGTGGACAGGGCTCACTGTGTCCTGTCCCCCAG
Seq C2 exon
GAGCATCACCCTGCACCACCGGATCCGGCAGGCCCCCAACCCTTACTCGTCGGAAATCAAGGCCTTTGACACCCGGCTGCAGAGAGGGGAGCTCTTCTCCAGGGAGGACCTGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
-PRIC285:NM_033405:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGAGAAGGATGGAGCT
R:
TCCTCCCTGGAGAAGAGCTC
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)