RnoINT0070096 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176732700-176733044:-
Coord C1 exon
chr3:176732897-176733044
Coord A exon
chr3:176732817-176732896
Coord C2 exon
chr3:176732700-176732816
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ACCAAGGTCCTGCCTTCTAGGAG
3' ss Score
6.7
Exon sequences
Seq C1 exon
GACTGCTCCTGAGGAAGAAGACGGAGATGAGGCCCCTGCGTGTGTATGGGGAACAGGCAGAGGCCACTGAATTCCCGCTGCCAGGAGTGAGCAACAGGAGTCTGTTTGGCAAGATCTCTCAGGAAGGAAGACCGAATCAGAGCCTCAG
Seq A exon
GTATGACACCTCTGTCTCTGCTGGGACTGAGGCAAGGGGACCTCCACTAGCCAGGGTTTCACCAAGGTCCTGCCTTCTAG
Seq C2 exon
GAGTATTACCCTTCACCACCGGATCCGCCAGGCCCCCAACCCGTATGCAGCAGAGATCAGAAAATTCGATGCCCAGCTTCGGGAAGGGAAAATATTCTCAAAAGATGATCTTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(26.3=100)
A:
NA
C2:
PF130861=AAA_11=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTATGGGGAACAGGCAG
R:
TGATCTCTGCTGCATACGGGT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]