DreINT0012532 @ danRer10
Intron Retention
Gene
ENSDARG00000012600 | HELZ2 (2 of 3)
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr2:42105499-42105933:-
Coord C1 exon
chr2:42105792-42105933
Coord A exon
chr2:42105619-42105791
Coord C2 exon
chr2:42105499-42105618
Length
173 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CTTCACTGTCTTGTTTCTAGAGC
3' ss Score
8.44
Exon sequences
Seq C1 exon
AATACTTGCTCAAGTTTGGAGAGAAGCTGAAGCTACTACGTGTGTATAGTCGACAGATGGAGATGCAGGAGTATCCCTACCCAGGCAGCAACCTCCAGTTATCACACAAATCACGCCAGGAGCGCTCTAAACCTGAGCTCAG
Seq A exon
GTAATATCATTGAATCAAAGCTAATGTCGAGATGATGTACAAGCTGATTTATTGTTAAAATACATTCTTGAAAATCCAATTTGTTTGCATGGCAGCCTATCTGGCATGTAAACAGTAATCACCAGTTTATCTGTTCTGTACAGTACTCAAAATCTTCACTGTCTTGTTTCTAG
Seq C2 exon
AGCTATAACACTTCATCACAGGATTCGAATGGGACACAATCCTTATTCACAAAGAATAACTGACTTTGATGACAGAATTAAGAGTGACCCTTACTCACTGACAGACACAGACATAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012600:ENSDART00000131278:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(19.1=100)
A:
NA
C2:
PF130861=AAA_11=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGTTTGGAGAGAAGCTG
R:
TGTGTCTGTCAGTGAGTAAGGGT
Band lengths:
245-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]