DreINT0077344 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58580300-58583820:+
Coord C1 exon
chr6:58580300-58580896
Coord A exon
chr6:58580897-58583636
Coord C2 exon
chr6:58583637-58583820
Length
2740 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTATAACATTCTCTTGTAGATC
3' ss Score
9.47
Exon sequences
Seq C1 exon
AGATGTAATCTAAACCATGGCTTTAGCAAAGAACCACTATAAACTTCAAGCATTACTACAGACGTACACACTGTGTGTGAGATGCGGGAGGTGCTGTAATAAACACAATAAAATTTCATACTCCCTCAACAATATCAAGCACAGCTGCTCAGAAAACATTGTACTGATCAGACGGAAACAAGACGGCTCATACTGGAGGCCTGTTGCACCCTTGCCAAACTTCCCCAGACCAAAGAAGTATGTTGCTTGCTGGTACTACACTAAAGATCGTGGATGCACAAGGCATGGAAATAATTGTCAATTTGCGAGCAGCTCGGAGGAAGCAGACTTGTGGAATGTCATGAAAGATGAAAAACTGACCATTCCTCAGATTGTGAATGCGATCAAACAAAACCAAAGGACACCGCAGATAACATTTCAGGAGAAACGAGGACCGCATGACTGCACGTTATGTCAGGTCCACTTCCCAACGGACGAGGACTTCATGAACCACTGTTTCACCGTAAAGCACAGAAGACGGATCTTTGAAGATGGCAATAAGACCTGGAAGCACCGCGAGCCGCCACCAACACACAAGGACCTGAAACTGTGTGAAAG
Seq A exon
GTGTGTATGTGAAAAGTGACATGCCATTAAATCAGGGGTTTCCAATCCTGTGCATGATATTCAAGGTCTTCAGGGTTAGTAAATGATGTTGGGACAAACTGAAAGGATTTTTTCATTTCCAGAACCAAAGATAACATAAAATTCACTCCTCCCTTAGTCACCCAAGATGTTCATGTCTGTCTTTAATTAGTCGTAAAAAAAATATATATATATATTTTTCTCAGGATAAAATTACAAATTTCTGAAATTTCCTCCATATATATATATATACACAGTTAAAATTATTAGCCTCCCTGAAGATTTTTCCAACACATTTCTAATCATAATAGTTTTAATAACTCATGTCTAATAACTGATTTATTTTCTCTTTGTCATGATGACAGTAAATAATATTTGTCTAGATATTTTTCAAGACACTTCTATACAGCCTAAAGTGACAATTAAAGGCTTAACTAGGTTAATTAGGGTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATAATGATGGTTTGTTCTGTAGACTATCAGAAAAAATAGCTTGAAGGGTCTAATAATTTTGTCCTTAAAATGGGGTTTAAAATATTAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCGGGATGAAAAATATTATCAGACATACTGTGAAAATTTCCTTGATTTGTTAAACATCATTTAGGAAATATTTAGAAAAGAAAAAAAAATTTAAAGGGGGGCCAATAATTCTGCCTTCAACTGTGTGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACTCTTCTTTCACAAACCAAAAACAATGTGAGATTTGAGAGGAAATTAAGGCTGTGAGTAGAGGAAGATCTTTCTTTATTATAATCACAAGCTCTACCATTTTACATCGGGGGATGCTGCCATAAATATTTAGTTGAAACACAACATAACATTTAATCTAAGCTTAGTGGTGCGACACAAAAATATTTAGTAGTGTGTAAGTCACAACTAGCAACAGGCCCCAGTTGAGAGAGCCAGAGGGGGGGGGGGGGGGCAGCTACACTCATACGCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATATAGATAGATAGATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATATTCAAAGAGCTGTCATTATCACAGAACGATTATCTCAATGTTGCTATTGTTTGATTCAACCGATTTTTATCTGAACGTGATTTTGAGTAGCTTGTCAGTGAATTACAGATCTGTGTTGTAAATGTTGCTCCATGTGCAGGAGGTTTAGATCCAGCTTTATGCCTCATTCACACAAGCAGCGATGTCGCTCTGGGAGAATACAACCGGCCTCTGAGCGAGCTGAGAGAGGATCACGTGAGCTCTACTAGTGCTTCTATTGGCTGTCTCAAGAAAGTCACTCTTCATTTGCATGAAGTTAAAGAATTCTCAACTTTGCCCCTGTGAGACACTTAGAGTTTCAATGAGGCTTTGCTGACAAAATGTAGATAAAAATTACATTTGATTAATTGCCTAGCTGATTTGCTACCCTTATTCCTTAGCTAGAATAATTTTCAGTCCCCTGGAACTGCATTTGGTAAGTTCAAAAACCACTGAGAACTTCCAGAGGTACTTTATTAATTTTTTTTTTTTAAAAAACATAATTTCTTTACAAATAAAGAAAGACTTTAACATTTTAAGTGAAGTTTCACAAATGTGGCTGGTCTCTCATCTGTTTCAATTCAATTCAATTCAATTCAGCTTTATTTGTATAGCGCTTTTACAATGTAGATTGTGTCAAAGCAGCTTCACATAAATGGTCACAGTAACTGGAACAGTGTGGTTCAGGTTTTAGTGTTTAAGTTCAGTTCAGTTCAGTTTAGCTCAGTTCAGTGTGATTTAATCATTACTGAGAGTTCAAACACTGAAGAGCAAATTCATCGATGCGTAGCTCAACCAATCCTGAACCATACGAGGCAGTGGCGACAGCGGAGAGGGAAAAAAAAACTTCACCTGATGGGAGTGAAGAAAAAAACCTTGAGAACCAGACTCAGTTGGGCACGACCATTTTAATTTCTCCGCTGGCCAAAAGTCTTGTGCAGAGCTTCATTCGCTGTGGTCTTACTAACAATCTGTAATTGTTAGTAAGCCAATCGGATCATTCCGAACTCACTATATAGCCCGTTTTTTTTTAAATCCCCCCATCCACTCCATCTCCCCTTTTCCTCCATTACCAGGGGGAGCTCTTGAGAACTACCTGATCTCAGACCCCCTTACATGCTCATCGACCAGGCAGGAGCTCTGGCCTCACTTATCTCCAAGCTCAGGGTTCTCTCCTGGGACAGCATGCCAAACCTGCTATTGTTATCAAGCAACTCTTGAAATAACAAACGTGAGAGTAAAATATCTGTACATTGTTGTTCCAATTGTTGAAAACTTTGGACCTCCAGGACCACGATTGATCACCTCTGTATTAGATGTTTTCCTATTTCAAAAATAACTAAAGCAGCATATTTATAACATTCTCTTGTAG
Seq C2 exon
ATCCCTGATATGTGAGTATGGAGATAACTGCACAAAGGCGCACAGTCAAGAGGAACTTCAAGAATGGCAAACAAGAGTCAGAGCTGTACGAAATAAAGCCCGAGATGCAGCCAGTCAGGGTCTACTCTCCTACCAGGACAATCTGCTGGACGAATACAGGCACAGCAAAGACAAGAAGATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]