GgaINT0011566 @ galGal3
Intron Retention
Description
NA
Coordinates
chr20:9713565-9714096:+
Coord C1 exon
chr20:9713565-9713836
Coord A exon
chr20:9713837-9713912
Coord C2 exon
chr20:9713913-9714096
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGATGGCTCTCTCCCGACAGAGC
3' ss Score
7.82
Exon sequences
Seq C1 exon
ATGGCCGTCTGGGAGGCTGAGAAGGAGCACGGCCTGGCACGCTCCAACCTGCTGCCAGCACCAGGGCCGTGCGTGGAGAATGGCAAGCCCTCAGCACCCGCCCCCGTGCACTTCTACTGCCGGCTGTGCCTGGTGACCTTCAGTTCGCAGGAGAGCTTTGAGAACCACTGCTCCTCCGTGGAGCATGTACAGATGCTGTCGGTTGACACCTCCGTGCAGTGGATGCACCGAGCTCCACCACTTGGGCTCAGTACCTTCAAGCTGTGCAGCAG
Seq A exon
GTAAGGGGCTGGGCAGCAGGGCGGGCAGCGTGGGTTCCAGGTGCGGGTGGCAGCTGGGATGGCTCTCTCCCGACAG
Seq C2 exon
AGCGGAGGTGTGCGAGATGGGGGACAGCTGCACCAAGGCTCACTCCAACGAGGAGCTGCAGGAGTGGATCCAGAGGGTGAATGTTGCTGCCAAGAAGAAGAAGCGGGCCATAAAGGAAGGGTTGGTGTCCTACCAGGACCGGCTCATTGCTGAATATCAGACGTGCTCCAACGAGGTGCTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138:ENSGALT00000009906:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=WD(100=27.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTACAGATGCTGTCGGT
R:
TTCACCCTCTGGATCCACTCC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]