DreINT0077350 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58591527-58596488:+
Coord C1 exon
chr6:58591527-58592168
Coord A exon
chr6:58592169-58595695
Coord C2 exon
chr6:58595696-58596488
Length
3527 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTTTCTCCGAAATGCAGTTC
3' ss Score
5.38
Exon sequences
Seq C1 exon
ATTAAGTCTACGAGGGACTGTGCAGCTGAAAAATGAGTTGTCTGATGACAGGTTTGGAATGAAATGGGCTCACCCGGGTGAACTTTTTGCTGCTGTGCCTCTGTCTCAGCCACTCACACCTGATGCTCCTCAAGGTTTCATTGTGAAAAGACATGCCATCAGATCTCTTGTTCGTGTTGTGAAGAACAATGAATATTGTGGGCCTATTTATGAAGCTGAGTTTCTGAAAGATGCTGCCTCCGAGACACAAGTACATCTCCAGCTTTCCAAACGCTGCTGTGCTGCCCTTAACCTGCAGAATGGAGAGGAATATGAGATGGAGGTCCAGTTTCAAGTCAATCGTCTGTGGTTCTGCGAGATGCACAAGGCAATTGATGATCTCCCGAGGATGGACAAAGTGTTGCCTGATCTGAAAAATGCTCACCTCAGTATTTCTTTCCAGTCAGATGAAGGAGAGTTCAATGAGAAGCAGCAAGCAGCAATGGACTTTGTCTTGGGTGTGTCAGACAACAGAAGCAGCATCCCACCCTTGTTGATTTATGGACCTTTTGGGACTGGCAAAACTCGAACCCTTGCAAAGATGGCACAGGCCCTTGTACAGCAGCCACACAACAAAATCTTAATTTGCACACACACAAACAG
Seq A exon
GTAAGACATAATTCAGTGCCACTTTAGAGAACTCTCACATACGTAAATCTGAGGATATATATATAAAAAATACATATTTTCAACCATTAGAATAACAAATATTTATGTAAACAGATATGTTTGCAATATTTTAAAATATGTATTGCATATGTGCTCATACAGTGCATCTGGAAAGTATTGATAGCGCTTCACTTTTTCCACATTTGTTTAAGTTACAGCCTAATTCCTAAATGGATTAAATTAATTTTTTCCTCAACATTCTACACACAATCCCCCATAATGACAATGTGGAAAAGGAGTTTTTGAAATTGTTGCAAATTTATTAAAAATATAAACCTGTAAAATCAGATGTAAATCAGTATTCACAGCCTTTGGCTCTAAACTGAGCTCAAGTACATTCTGTTTCCACTGATCATTCTGGAGATGTTTCAGCAGCTTCATTGGAGTTCACCTGTGCTCAATTCAGCTGATTGAACATGATTTGAAAAGGTATACACCTGTCTATATAAGTCCCCACGGTTAACAGTGCATGCCGAAGCACAAACCAAGCATGAAGACAAAGGAATTGTCTGTAGACCTGTGAGACAGGATTGTCTCCAGACACCAGGGGCCTCATGTACGAAGATTTGCGTGGAAATCTTACTAAAACATTGCGTACGCACAAAGCTGTAAATGTGCGTACACAGAAAATAATTCAGATGTATGAAACACTGCTTACGCCGAATCTCACGCATATTCTTTTGTACATCCGAATGAAGGTGAAACTGAGCGCAACATGCACGAGCACAAAACCCCTCCCTGCCTCCTCCCCCGTATGAATATGCTAATGACTATGCTAATGGAAAAACCCAACGAAAAAGCAAAGGCAAAAGCAAGCAAAAAGAGAAACTTTGAACAGAATGTGAATTGTAGGTGCTGCTTTCGGAGGTAGACTGGAGAAAAGCGGTGTTATTTGCAAGTTTGTTCTCCGGAATTAACAACAAAAGAAAAAATAGAGTGGGAGAGTTTAGCTGATGCGGTTAACACAGTTGGGTCTGAACATCGCACTGAGTGCATTAACAAAAGAAATAGTGTGGTTTATATCTGTAAAATGTTGCAATACCCTTAACTGTCTCAGTGGCGCATCTCGTAAGATGCATGTGATCATGTTTTGACACGTTCGAGCATGAACTCGGCTCGAATCCGTCTGATGAACTCTTTCTTCTTTTTTTCCCCGCTACATATCAGATTTTGCCCACTATTTATCACGAGAAAGACTAGTAGGAATCATTAATAAGTTTGTGCATCATTTTATTTGCACATTTATTGAATGGAAATGTTTCTGATTCACGCATGCAAATTCATCTTCAGATAGTGTCTTTATAGCAATGTGTGTGCGGTAGATCGCTCAGATTACATTGGGGAAACAGGCGACTGCTGCAAATTGTGCTTTAATGTTTGGCTGGTCAACTGTATGGTATGGAAACCTTACATACCTACTAGATGAACCCGTCTCATACAGCTGCCATTGCAAGGCTCAGACACTTTGTAGAGAAGAAATATAACACAACTGCCTCTAGGAGTCGCCAATGGAAATAAAACAGACACGCACAAAAAATGTGCGTACGCCAGCCAGAAAGCTGCCGTGAAGCTGCGCACATTCCCACGTTCAGTTCATTGTTAGTAAATCCAAACGTGAGCGATTCTGAGCGTGAAACCTGGCGTATGCAAATTTTTTGTGCGTACGCAGCGTTGATACATGAGGCCCCTGGACTCTTACTAGAGCTGGCCGGCCATCTAAGCTGAGTGATAGGGGGAGAAGGGGCTTAGTCAGGGAGGTGATCAATAACCCGATGGTCCAACCCAAGCTCATTTTGGAAACGTAGCCCCGCGGACGTTTCTGGAGACCGCGATTTACGTGGCCGGAGGTACGTAAAGGCCGCGTTTAGTTTTTTTCGAGCAAACGTTGCGGGGCGGTGTGGCGCCGCTCCGCCCCTCCTCTTCGCGCTTGCTGGCCGACAGCTCGCCTCCGAGTGGAGGGCTTTCCCGATGCAATCAGTTTGTCCGCTTAGCTCACAGCGTTGTGTCGGCGGAGCGGAGGCCCCAGAGGAGGAGGAGGAGCCGGCTGCGGTGGACGACGACCGGGATCGAGTCCGGGGAACAGCAGGTTCCAGAAATCAGGTAAGACGAAAAACGGAATCCGAAAAATAAGGGTGAGAAAGCGGCGGGATCCGAAAACACGGTCGAAATCGAAGACGAGGGCTTTTGCTTTTTTTTTTTTTGCTTTTTTCTGGACGGCTTTTGCGAACCGTCGCTCGGGTTTAGAGAAGGACAACCAACTGTGCAGCAATCCACCAATCAGGCACCTGTATGGTAGAGTGGCCAGACGGAAGACACTTCTTAGTAAAGGGCACATAGCAGCCCAAAAGGCATCTGAAAGACTTTCAGACCATAAGAAACAAAATTCTCTGGTTGATGGACTGAATGCCAGGCATTACGTTTGGAGAAAAGCAGGCAGCGCTCATCAGCAGGCTAACAGCATCCCTACAGTGAAGCATGGTGGTGTTGGCATCATGCTGTGGGGATGTTGTTCAGCAGCAGGAACAGGAAGCCTAGTCAGGATAGAGGGAAAGATGAATGCAGCAATGTACAGAGACATCCTGAATGAAGACCTGCTTCAGATACTCTTGACCTCAGACTGGGGCGACGCTTCATCTTCCAGCAGGACAGTGACCCAAAGCACACCGCCAAAATATCAATGAAGTGGCTTTACAACAACTCAGTGAATGTCCTTGCGTGGCCAAGCCAGAGCCCAGACCTAAATCCTATTGAACGTCTCTGGAGAGATCTGAAATGTACCCGTTGCTTCCCATCCAACCTGATAGAGCTTGAGAGGTGCTGCAAAGAGGAATGGGCAAACAATCCCAAAGACAGGTGTGCAGAGCTTGTGGCATCATATTCACAAAGACTTGAGGCTGTAATCGCTGCCAAAGAGGCATCAACAAAGCATTGAGCAAAGGCTGTGAATTTTTCAGCTTTTTTATTTGTAATAAATTTTCAACAATTTTAAAAAACTCTTTTTTCACATTGTGATTATGGGGGATTGTGTGTAGAATGTTGAGGAAATAAATGAGTTCAATCCATTTTGGAATAAGGCAGTCACAGAAAAACATGTGGAAAAAGTGAAGCGCTGTCAATACTTTCCAGATTCACTGTAAATGACATTTTTTATATCTGTGACATCCAAACATAAACTTGTTTGTTATGTATATGTGATTTGTAAATGTTGCCATATATCAGATTTCGAGACCGGCTGTTCCACAAAAGCCAAGGTTTCCATGATTCATGTTGAATAGTATTGTTTGGGTTTTGCTTTTTGGCACACCAAAATATAAGCTGGTCTTTTTCAACAGGGCAGCAAACTTTCATAAATACATTTTAAATGCAATTGCATTAGTTAAATCAATCAGTAGAGTATGGAACAAGCATAATTACATAATTATTTGATTATATCAACTCAAATGATCTTTTTTTTCTCCGAAATGCAG
Seq C2 exon
TTCTGCTGATCTTTATATAAAAGCTCATTTCCACGAATATGTAAGGAATGGCCAGCTTCACGCCAGACCTCTGCGAATAAAGGCAATGGAAATAAAGCTCGCATCCACCGATTTCATCACTCTACAGTACTGCCATTTATCAAGAGAAGCCAATTGCTTTGAGTTTCCTGATAAAGCAGTTTTAGATTCCACAAGAATCGTCATAACAACAACATCTCTGGCTCGTTTCTTCAACGACATGAAGCTTCCTGAAAACTACTTCAGCCATATTCTGATTGATGAAGCGTCTCAGATGTTGGAGTGTGAGGCTCTTATGGCACTTAGCTTAGCGGGTAACAATACACGTGTGGTTTTAGCAGGAGATCACATGCAGATGGGACCCAAGCTGTTCTCTGTGAGGCCAGACAAATGTTCTGAGCACACCCTGCTCAATCGCCTCTTCTATCACTACCAAGCCGAAAACAGCGATGTGGCCAAACAAAGCCGGATCATTTTCAATGAAAACTACCGCTCCACAAAAGACATTGTGGATTTTGTATCAACACATTTTTATGTTGGAAGGAGTGATGTGATCAAGGCTAGAGGAAATGTGCCGTCTCATCCCCAACAACATGCTTTGCAGTTTCATCATGTAAGAGGAGAATGCTGTCTGGACCCAATGAGCATGTCCTGGTTCAATGCAGAACAAATTGTAAGAGTCGTTCACATTCTGCAAGAAATAATGAAGGAATGGCCTCAAGAGTGGGGTGCTGCAGATCCAGAATCAGTCTGTGTCCTATCTCAAGGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(31.8=28.8)
A:
NA
C2:
PF130861=AAA_11=PD(67.7=49.8),PF130871=AAA_12=PU(61.5=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]