DreINT0078068 @ danRer10
Intron Retention
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22849797-22852851:-
Coord C1 exon
chr13:22852618-22852851
Coord A exon
chr13:22850102-22852617
Coord C2 exon
chr13:22849797-22850101
Length
2516 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACTGAATCTGTTTTTGCCAGGTA
3' ss Score
6.56
Exon sequences
Seq C1 exon
GAGCAAGGAAGGACTAACCAAAGCCAAGGAGATTTTGACACGCTTGGGTGTAGAGCCGTCTGAGGACGACTGCATTGCTGTGCAGCATGTTTGTGCCATTGTCTCTTTTCGCTCTGCTAATCTAATTGCTGCCACTTTGGGTGCAATCCTGACACGTCTGAAGGACAACAAGAACACCCCACGTCTCCGCACTACTGTGGGCATTGATGGCTCCCTATACAAGATGCACCCACA
Seq A exon
GTGAGTATCACATTCATCATTTTTAAAATCAGACTCAAACATGGCTTATTATTTCTAGTAATTGCATGTAACAAGTCATTACAGAGGGATTTAAGAATACATTTGCAGGTGCATGTGACACTCTGGAGAGTACTGAACTCGCTGAAGGGCTTTTGAGACAAAGGCGAGCTCTATTAATATACACTGAGTAGGTTTCCATAGGAGCAGCTGTGCCTCAGTTTGTTGTGACATTCTCAGTGACCTTCTCTGGACACTAAACTAGACATTAAAAGGTCACAGAGATCAGTTGAAACACACATGATTAAACTAGAGCTTATATCACATGAATTCTATCCAATCCATGTCACGTATTCACAACAATTCACAGGCCTCTTTGAATGTGAGGATAGACAGTAAGTCTTTAAATAGAAAACCTTTAGACTCAGTGAAAGCTGAGAGAGAGGTTTGGGAGAATGAGACAGGGCTATAAGACAATACATCATGACATAAACACTGTCCTTCAAACGCCTTGAACAATGATGGTTTTCAGATAAAATATCCTTCAACTAAAGCTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAACTGATCGATTTATGGTTTGACAATTATTTATATTACATAACACTTTGAAACTCTGAAGTCTGTTTGGTGAAAGTCTGCTTGTTTTTGACAACATGTTTTTCTATTCCACTGTGCTACTTTACCGTAGGTTTATTTATAAACACAAGCTAGATGTGTTTGATCACTGCTTTTCCATCTCAGGGTTCTAACATAATGCTTAAAGGGATAGCTGGTCCAAAAGTGAAAATGTACCCACGTTTTATCACCCTCAGTTGATTCCATACCTTCATGAGATTTCTCTCTTCTGTAGAACACAAAAGAAGATATTTTGAAGGATGTTAGAAACTGGTAACCATTAGCATCCTTAGTACAAATACTATGAATGTCAATAGGATTTTTCAAAACATTATTCAGAATATCTTGTTTTGTGTTTAACTGAAGTAACTACATGAATGTAAGTAAATGGTTAGAATTTTTTTAAATTTTGCATGAAATATTCCTTTAAGTAAAAAGAGATAAACCTTTTTTAAAAGCATTTTGTGTTTTTTTCCAATTGCAATGCTCAATTTTTTCGATAAGCTTTTCAGTCAAGCTCACATTTTAAACATGTTAGTTTACGTTTACACTGCAAGGCTTAGTGCTTAAATCAGATCTTTTTCTCAAATCTGATTTGTTTTTGCATACTGTAGCTGTTCACATTATTATAAATGTGGCCAATATCAGATTTGCAGTGTGAGCAGATCATGAACCTAAACTGACCCGCAAGCACCAATATACAATTACGCACAGCACGAAATGTCTAATAATGCACACAATGTGTATACTGTATGAAATAAGCACGTTGTCAGATTATGCTTAATATAATTATTGCCCTTTTTACAGACAACAGTGGTGTATTTCATGAACTGTAAAGGGTTGTTCTGCTATTACTAATGTGTTCTTCCCCATTTCAAACCTAAAATAAGTCTCTTGTGATTGAAAACACTAATAATTTGTGATTTATGACAAGCGTGGTGCACGTTTTTCTGACCACTGGTGTACTGAACGCATCAAGGGTTAATATAATGATTAAAGCCAGAAATTGAACTGTGATGGAGGAGTTGGTTTGTCTCTGTTTGCAGATTTATTTCATTTTACTTTGTTATAAACAACAGGCACGTGCAGAAGGGAGGTTTGGGTTCTTGAGCACCTGCCCTTTTTTTCTCTCAGAGAGAAAGTTCCCCCTAAAAATTAAGTGCACGAATCCCCCGACGCTCTTCAGCTTTGTGATCAACTCACGCTCCAATCGTTAACCAGATTGGTAAACAAGCACCAGTTTTGCTTTTACAGTTTTTTCAAAATGAACAACCAACTTTCTGTGGTAAATAATCTGCCCTGTGTGCCATTCTACTATGCTGCTGAGGAGTAGATGATGTTTGCAGCAGAATGATGACGCATGCACTCAAAGATTATGTAAAAGTCACATAAAATCCTACATAACTATTCACACAGCGGATGCATTGCAAAACATCAGATCTGTGTCTGATTTAATACTACATATAAAAGTGGCACAAATCTGAATTAAATAGATCAGATTACATGCGGTTTGGGCTGTTCACACTGTCAAGACAAAAACAGATCTGAGCCACATGTGGGCAAAAAAATCTGATTCGGGCCTCCTTTGCCTGGAGTGTGAACGTAGCTTTAGTGACCATTCTCGCAGAATGTGCTTTTGCCATGCACCTGCAGTTTGAAAAAAAAAAAAGTTTTCTTTATGCAAAACATAAAGATTTACGAAACAAAATGAAAGTTGGAACAGATGAACATGAAAAGAATGTGGCATAACGGAAAGATTCCCTCACAGACTGACAACCTGTCTGGAATGAGCAATGGTACATCATCTAAACCCACTGAATCTGTTTTTGCCAG
Seq C2 exon
GTATGCCCGTCGGTTGCACAAAACAGTGCGTCGTCTGGTGCCAGAGTCTGATGTTCGCTTCTTGCTGTCTGAGAGTGGAAGTGGAAAGGGAGCTGCACTGGTGACAGCCTGGGCTTACCGTTTGGCGGACCAGGAGCGTCAAATTGCAGAAACCCTGGAAGAGTTCAGGTTGACCAAAGACCAGCTGCTAGAGGTGAAAAAGAGGATGAGAACTGAGATTCAGAATGGACTGAGCAAGAGCACCCAAAACACAGCCACCGTCAAAATGCTGCCCACATATGTGCGGAGTACCCCTGATGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452:ENSDART00000057638:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]