MmuINT0077965 @ mm9
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61749096-61753141:-
Coord C1 exon
chr10:61752908-61753141
Coord A exon
chr10:61749401-61752907
Coord C2 exon
chr10:61749096-61749400
Length
3507 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACTGCCACCTTCTCCCTCAGGTA
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGATAAGGAAGGCGTTCAAAATGCCAAGGAAATCTTGACCCGCCTGGGAGTGGAGCCGTCTCACGATGACTGCGTATCGGTCCAGCACGTATGCACGATCGTCTCCTTCCGATCAGCCAACCTGGTGGCTGCCACGCTCGGTGCCATCTTGAACCGCCTGCGGGACAATAAGGGCACGCCCAGGCTGCGGACCACAGTTGGCGTAGACGGTTCTCTCTACAAGATGCACCCACA
Seq A exon
GTGAGTCCTCCGTGCATTAATCCCCCCATCTGAGGCCAAGGCCCTCTCCAGAAGGCAGACTTGCGTGCTCAGGGTACGGTTTGGGAAGAAACACCTGGGAAACAAGGCTAAGAGTTGCTCATCTTGGACGCCTCACTCCAGCGCCTTCTCACATGTTGCTTCTGCAGTCCGCTTTGGTCTCTTATCTCCCAAGGCGAGACAGAAGTTTCTTCAGACAGGAACGTGAGGTGTAGTGTCCCTACAGCTAGGTTGCATTGTATCCGTTTACCCTGTTAGAACTGGAACTTGGTCATAGGTATTCCTCATTTTTTTTGGTGATTGTTAATTGTTGTTGTTGTTGAGACAGTGTCTGATGTAGCCCAGGCTGGCCCCAAACCTGCTGTATAGCAGAGGTTGGCTTTGAACTCCTGATCTTCTGGCCTCTGCCTCCAGGTGTGTGCTGCCATGACCGGTCGCATCCATTGTTTCAGAAGCTTCCGATATAATCCGTCAGCCTCAGACATTGCTGCTTCAAATGGGCCCATGTCGGCTCTTGCCGTCTGAGAGCCAGAGATAGCGTCATCATGAGGGGTCTTTACAGACTGGGACAGGCTTCTCTACTGAGCTGCCTTCCTTTTTTATTTTTATTTTTTTTGAGAGAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGCTGCCTTCTTGCTTGCTCATGGTGTTGGCCCTTCCAAGCTTCAGAAAGTCTCCCCGGCCATTGACAAAGTGACTGAAACTTCTGAAATGAAAGCAAATCCTGAGTCTTTGCTGAGGTTTAACGATCTCTGACCATGGCACTGGGTTTTGTGTGAGTGCAAGACCGAAGCTCGTATTTGCAGATTCTCAGCCTTCACACTGGGACACTTGCACAAATACATGCATTGAAGTAGTTCCTGGATGCCAAGGGGCTAGCAGTAGGCTAGCTGGGTGATGCCAGCTTCCAAGTTCACAGTTTTGTGTGTGTGTGTATGAGTGTATAATAAATATATGTATATATGTACATATATACATATATATTATATATTATTTATATATATTAAATATATACACATATATATTTAAAAGATACTTGAAAGAGAAAATTAACCATTCCTTTCTTTATCCTTCCCCTTTCTTTTTGGTCCCCTTAAGAAGCAAAGTCTCATTATGTTGGCCAAGCTGTCCCTGAAACTTGTAGGCTTCAAGTAATCCTTTTGCCTCAGCTGTCGAGTAGCTGGGACCACGGGTCTATGCAACTGCATGCAGCTTTTTCTGTGGAATTCTTGGCTATTTTTTTTTTCCGACAAGAAAGCCTAAAGGTGTATAATATCATATTAAAACTGGTGTAACTAGTGAGGCCCTTGTCTAAAAAATCCAAGCAAAACAAAACATCTCTAGGCGGTAAATCAAATACACACGACACCAGCTCTATCACCATAGCGAGTCCTCAGGATACAGTCTGGTGGTGTTAGGGTCATCCATGCTCCAAAACTACTTCTCTTCTGTTTGCACCTTCACCTTCTTTTAAGAACTTATTATTTTACGTGCATTAGTGTTTTGCCTACACACTTGTCTGTTGAATCTCCTGGAACCGTAGTTACGGGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCACCATGTGCTCTTAACCACTGAGCCATCTCTCCAGCGCCCACACCTTCACATTTTAAAGAGTAACTCTGACCCGGGGTGACTGCTCAGTCAGGAAAGTGCAGGTTATACAAGTTGGAACACGGGATGCACTTCCCTAGAACCCAAGACAAGTGTAACAGCGTGCACCTGTAATCCCGGGGGAGGGTAGATCTCTGGGGCCTGCTGGCCAGCAAGTCTAGCCTGTTGGGGAGCCCTAGATTCAGGAGAGACCCTATCTTTAAAAATAAGGTGTGGCGCGATTAAGAAAGATGCCTGATATTAACCGTGTCCTCCACGCCTGTGCTCACATGTGAGCTCATGTATGTATACCTTACTCATGTGCACCCATCCAGGAGCGTGCGCATGCTCAAAAACAAAGAATAACTCGGAACAGGTGTTTCCTCATTTCAGAATTACTAGAAATTCGAGGCCATTTTCAAGAGTTTCAAAAAGAATAGAAGCCATTCTTGACCCGTCCCTTGGAGGCAGTGACTGTTGGTCTTTTGGGGAAATGGCTTTTCCTGTTTCCTTTGGCCTGTGGCCATCCATAATGTAGACCACAGGCTCTGTCTCACACTGGCCTAAGCTTTTCTTCTAGAAAAGAGGAAGATCCAAATGAAAAACAAACAAACAAAAAAAGCGAAGTAAACAAAACCACACAAAAAAGGTTATTGAGCCTGGCTCCTTCATTCATGTGTGGTTCCTCACTAAACCCATTCATTTCCCAGCCCCACCCTCAGCCAGACTCTGGTCTTCCTGGAGTCCAAGGTCAGTACTGGCTCAAGGTCACTTGCCTCAGCATTTGCCCTTGTCCTTGGGTCTGACTCTGAAGTGCTTGCCTCTGGCCCCTGTGGTACAGGGCTGTAATATAGCCTTGATAGACCCCCTTTTTGATCATTTGAAGCAAAGTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCTCTCTCCTAATTGGTTATTTTTATCTATTTACATTTCAGATGTTGTCCCCACTTCCCCCTCCGAAAGCACCCCCCCCCATATCTCCCCTCCCTTGAGCAAAGTCTTGCTATGCAGCTCCTGCTGGCTTAGAACTGACTCTGTAGCCCAGGTTGGTCTGGAGTTAGCAAGTGATTCTGCCTCACACAAAGATGGTTTGGGCCCTCGAATTTTTTTTTTTTTTTTTTAGATATTTTCTTTTTATACATTTCAAATGCTATCCTGAAAGTTCCCTATACCCTCCCCTACCCACCCGCTCCCACTTCTTGGCCCTGGCGTTCCCCTATACTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACTCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATACGAGGCTGCTATATCAGGGTCCCTTCCTCTCTTTTTTTGTTGTTATTGTTATAAGCAGTTTTAGGTAATTTTTTTTTTTTTGTATTTCATGCATTGTTTCTATGGCATGTACATAGAGGCTGCATAAGCAAAGAGCAGTAGCAGAATGGAATCAAAGCGTTCTGACAGGAGAGTTCGAACCTGGCCCAAGTATGTAGCCTGGTCCAGCCCTTGTGGCTCACCCACTGCCACCTTCTCCCTCAG
Seq C2 exon
GTATTCCCGGCGGTTCCACAAGACCCTGAGGCGCCTGGTGCCTGACTCGGACGTCCGGTTCCTCCTCTCGGAGAGTGGCAGTGGCAAGGGAGCCGCCATGGTGACCGCTGTGGCCTACCGCCTGGCCGAGCAGCACCGGCAGATTGAGGAAACCCTGTCCCACTTCCGCCTCAGCAAGCAGGCACTGATGGAGGTGAAGAAGAAGCTGCGGTCAGAGATGGAAATGGGGCTGAGAAAGGAGACCAACAGCAGAGCTACGGTCAAAATGCTGCCTTCTTATGTTCGGAGCATCCCAGATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-Hk1:NM_010438:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(60.9=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(31.2=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: