DreINT0081268 @ danRer10
Intron Retention
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13710302-13710705:+
Coord C1 exon
chr3:13710302-13710412
Coord A exon
chr3:13710413-13710499
Coord C2 exon
chr3:13710500-13710705
Length
87 bp
Sequences
Splice sites
5' ss Seq
AATGTAGAT
5' ss Score
-2.07
3' ss Seq
CTCTATTTCCTGCTGTTCAGCTC
3' ss Score
6.03
Exon sequences
Seq C1 exon
TTCAAATCCCACCCAGCACAACCTACGTGCCGCCAATGAAACGACCCATAGAGGAGGAGTCCACCGATGAGAAGAATCCTAACAAGAAGAAGAAGAAGCTGCAGAAGAAAT
Seq A exon
GTAGATGTTCTTCATTTGTTCACAATTTCTTTGTGTGCGTGTTTGCACATTACTGACACACACAACTCTCTATTTCCTGCTGTTCAG
Seq C2 exon
CTCCAGACGAGAAAGCGGAGCCTGCACAGGCCATGAACGCTCTCATGCGACTGAATCAGCTGAAGCCGGGCCTGCAGTATAAACTCATCTCTCAGACCGGGCCTGTTCATGTTCCTGTGTTCACCATGTCTGTAGAAGTGGATGGAAAGAACTTTGAAGCCTCCGGTCCCTCCAAACGCACTGCAAAACTACACGTTGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177:ENSDART00000162317:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=84.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAATGAAACGACCCATA
R:
GAGTTTATACTGCAGGCCCGG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]