RnoINT0074289 @ rn6
Intron Retention
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22431810-22433252:+
Coord C1 exon
chr8:22431810-22431920
Coord A exon
chr8:22431921-22433052
Coord C2 exon
chr8:22433053-22433252
Length
1132 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTGCCTTGTTCTCTTCTTAGAGG
3' ss Score
9.25
Exon sequences
Seq C1 exon
TTCAAATCCCCCCCAGCACCACCTACGCCATCACACCCATGAAACGCCCTATGGAAGAAGATGGGGAGGAGAAGTCTCCCAGCAAAAAGAAAAAGAAGATCCAGAAGAAAG
Seq A exon
GTATGTGCCCTGGTTTGTGTACCCTCTCTTCGTCTGGCTCAGTCACTGTGCTGCTGGAAGTTAGGAGTGTGCTTTTATTTTTGTTTTGCTTTGCTTTTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTGGAGCTGGGGACAGAACCCAGGGCCTTCTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGCTTTTTTTATTTTTTTAAACACATATTTAAAGTCTTTATTACTTTATCCATTCATTGCGGGTTTGTTTGTTTGTTTCTTTTGTTTTGTTCAACCTAGGGTTTCTCTGTAAACCAGACTATCCTTGAACTCACCTGCCTCTGCTGCCTAAAGGCTGGGATAAAAAGCGTTGCCATCACTGCCCAGCTTAAAAGTTGTTGAATTTTTTTATCTGTGTATATTTTAAAATTTTTTGTATGGGTGTGAATGTGCATATGTCATGGTGTCATGGAGGTTAGAGGACAGCCTTGGGTATCTATCTTTGCCTTGTTCTAGACAGGCTGTCTTTGTTGTTCACTGCTGACTAGGCCAGGCTAACTGTCCCCATGCGCTTCCTGGGAATTCTTGAATTTCCATCTCCTGCCTAGCCATGGGAGTACAGAGATCACAGATAGGCTGTCTCGTCTGTCTCTACATGACTTCTCAAGATCTGAGCTCTCAGACAGTCATTCACAACAGTAGGCTCTTTGGCCTCTTAGCCGTCTTCCCAGCCCTTGATTTTTTTTATTTTTTATTTTTATTTTTTAAAGACATGGTCTCTGTTTCGTAGCTATACTTGTCCTCAACTTGGCTGTGGGGACCAGGCTGCCCTTGTTATTTAAGACATTTACACTAATGTCTTGGTTTGGTGGCCCGCATCTGTAATCTCAGCACCTGTAAGGCTAAGGTGAGAGAACTGCCATGACTTCAAGTCTAAGCTGAGAGTGAAAGAGAACCTTTCTTGTCCTGTCACCTCCCCCCAAACTAGTAATAGGCACAGATGCTCCCTTGAGGAGGGTTCTAGCAGAACAGAGGGTTCTAGCAGTCTCCAGGCTTTGCCTTTTCTGAGCTCTGGAAGTTTCACCCCATCCTGCCTTGTTCTCTTCTTAG
Seq C2 exon
AGGAGAAGGCTGAGCCTCCCCAAGCTATGAATGCCCTGATGAGGTTAAACCAGCTGAAGCCAGGGCTACAGTACAAGCTGATCTCCCAGACGGGTCCTGTTCACGCTCCCATCTTCACCATGTCTGTGGAGGTAGACGGCAGTACCTTTGAGGCCTCAGGGCCATCTAAAAAGACCGCCAAGCTACATGTGGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741:ENSRNOT00000009354:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGCACCACCTACG
R:
CTTCACAGCCACATGTAGCTTG
Band lengths:
302-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]