DreINT0081759 @ danRer10
Intron Retention
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64383422-64385715:-
Coord C1 exon
chr5:64385591-64385715
Coord A exon
chr5:64383542-64385590
Coord C2 exon
chr5:64383422-64383541
Length
2049 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTCTTTTTCTGACATTACAGAGG
3' ss Score
5.87
Exon sequences
Seq C1 exon
GAGGGAGTGGGAGATCCGTCTGCAGGAAACTCTTGGGCCATATTACGTGATGCTGTATGCAGCAGCCCATGGAGTGCTCTATCTCACTGTATTTGTCAGGAGAGACCTCATATGGTTTTGTTCAG
Seq A exon
GTAAATCGTTTCTTTAGAATGAAATAGTAGGGCGGCATGGTGGCTCAGTGGTTAGCACTGTCATCTCACAGCAAGAAGGTCGCAGGTTCGAGTCCTGGCTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTTGGCGTAGGTTTCCTCCGTAGTCCAAAGACATGCTCTATAAGTGAATTAAATAAACTAAATTGGTCATAGTGTATGAATGTGTGTAAATGTGAGAGTGTATGGGTCTTTTCCAGTATTAGGTTGCTGCTGGAAGGGCATGTGCTGCGTAAAACATATGCCAGAATAGTTGGCGGTTCATTCCGCTGTGGCGACCTCTGATAAATAAGGGACTAAGCTGAAGGAAAACAAATAACTGAATGAATAATATAGTATCTTCTCTTCTTTTTCTTTGGCCTTAGTCCCGTATGGTTGCGGGGTCAGCTCCATTTAGACTTGTCCATATGATAACGACTTTTTAAAATTTTTTAAAAATTTTTTTTATTTCATTTTTTTATACATATTCCGGCCAGCCTGTCGTCTGGGCCTGTCACCCTCATACACTCATACACTACGGACAATTTAGCCTACCCAATTCACCTGTACTGCATGTCTTTGGACTGTGGAGCACCGGAGCAAACCCACGCGAACGCAGGGAGAACATGCAAACTACTCACAGAAATGCCAACTGAGCCGAGGTTCGAACCAGCAATCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCTTCGCCCAATGAATATTATGGTATAATAAAATGATAAAAGCATTCAATGTAAAATAATAAATGGTAAAATACATATTTAAAAATGATGTATATAAATTTAAAATACATTGAAAAAATTAATAACATTAAACATAATACAATATAAATAAAAAAACACACTGAACTGTTAATATAGATAAGTTTACAATTACAATAAAATTAACATAAAATTACAATTACAATAAAAATTACAATTTAAAGCAAATGTTTTCATTTCATTAGATTTCTAAATGCAATTTATTCCTGCCAATTTTTCAGCAGCTGTTATTCCAGTTTTAAGTGTCACATGATTGTTCATAAATGACAGAACAATAAGAAAACAGTTATTTTAAAATTGTAGTAATAATTCAAAAAACATAACTGTATTGTTATTATTATTATTTTTATTAATATAATTTTATAATTATTATTAATGTTATTATTATTTTTTAAGTGGTATTTTATAAACAAATTTCAGGAGAAGCACGATCAGTTTTGATGAGGCTAATTCATTATCAACAATCATTCTATTATGCAATCATCTTAAGACCAAACCACCAAAAATAGTCAAACATGTCATACCTCTATTTTCTGTTGATTTTAGTATCCCTCCACCACCCCAACTCCACACTATTAAACATGATACCTACATAAATCTGAGGGGGGAGGGTTCTAGAGCCGGTCTAGACACTGGCTCAGACTCTGTCCTGATAAGGGGAATAACACAAGTTAGGGTGTCTTTCTGAGCTCAGAGCCTTTTCCCCGGACAGTGTGCCAAATACGCCTATTCTATTCAGTCTAATATCTGTGAGTGTGAACTCGTTAATTCAGCCTTGGTGCACAGAATATACTTTTGAAAATATTTAAGAACCTACTGATTCCATAATTTCTAGTGTAAGTGTATGTATGTTTATATGTAAATGAACATTATGTAATTTGATTTTGGATAAACGTTTTCTACCCAGTGCATTAATGTAATAATAATATAATATAATATAATATAATATAATATAATATAATATAATGTAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAAAATATAATAAAATAATATAATATAAAATAAAAATGTTATAATAATATAATATTATGTAATATAAAAATATTATAAAATAATATAATATAATGTAATATAAAATAAAAATGTTATAAAATAACAATAAAATATAAACTAATAATATAATATAATATGTGTCTTTTTCTGACATTACAG
Seq C2 exon
AGGTGGAACATGCTACAGTCACAACCAGAATTATATCTCAGATTAAGACTAAAGGAGCAGTGGGCATCGGCTTCACCTTCTTCGGGACGTCCTTCCTCTTTGTCACTTCCCATTTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926:ENSDART00000162511:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]