RnoINT0074721 @ rn6
Intron Retention
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3846547-3847212:-
Coord C1 exon
chr3:3847088-3847212
Coord A exon
chr3:3846667-3847087
Coord C2 exon
chr3:3846547-3846666
Length
421 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCCCGTTCCTTGTCCTGCAGAGG
3' ss Score
9.53
Exon sequences
Seq C1 exon
GCGGGAATGGGAGACACGCTTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
Seq A exon
GTAGGCAATACCACGGGGCTTCTCCCCCCACTTCCTCCTCTCTGTCCCACCTTGTCTCTGTCTCCCTCCCCCTCTCTCATATATGTGCTCGTACTACAGAGCCCATGTGGTTATAGGACGACCTGCAGAGTTAGTCCTTCCATCATGTGGGTTCTACGATCAACTCTGGTCTTGTCCTCAGGCCCTCACCATCTTACTGGCCCTCATCAGGGCTCTAGGTATCTCCATAATCCAGGCTTTATTCACACGTGGACCCTGTCCATGTGGGTCTCCTCACAGCAGCCTGCTCCCTCTCAGGCAAATGTGCACTTTGTGCTTGGGATCCAGCCTTTGAGGTTCCCCTGTCTGAGAACACAACACACAAGCATACCTCGTACAGTTGTGTCTGTGCAGGCCCTGAACCCCGTTCCTTGTCCTGCAG
Seq C2 exon
AGGTCGAGTACTCCACAGTAACTACACGCATCGTGTCTCAGATCAAGACCAAAGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCCTTCCTCTTCATCACATCTCACTTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039:ENSRNOT00000025764:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.9=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGAGACACGCTTGCAG
R:
GGTGAAGTGAGATGTGATGAAGAGG
Band lengths:
240-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]