DreINT0083750 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21298458-21299756:+
Coord C1 exon
chr8:21298458-21298559
Coord A exon
chr8:21298560-21299669
Coord C2 exon
chr8:21299670-21299756
Length
1110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
TGCTCTTTATTTTTTTGCAGCTT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGAGCTGATTAAAAAGGCTTATCTGCAAGAGGGTGAGTGTAAGGAGGGAGAAGTGTCACCACGAGAAGTTGGGCATAACATCTACATCCTGGCACTACAG
Seq A exon
GTGAAGCACTACATCAGATTGGCATGTTTGATGCCACTGCTGATTTTTTTGATTGAGTGATATGCAGAGCCAATGGACTATACTGTATGCACAGCTAGTGTTTTTCAGCCAATGATGAACTTCTGGTAAAAGCTTTATGTGAATATTTTCATTTTTTTAAGGTTTCTTTTACAGTATCGATGTTGTAATGTAATTCAGATATAATCATTTAAATAATGTTAAGCATTCGTTTGGTTGTTAAAGCGTGAAAAGAGATGAAAGAGCGTTTAAGCGCAGGGACCGTCATTAGCAGCATGCTAGCGCAGAAATTCTATTGAAAATACTGAGGTAAAACTTAAACTTAATTCCATATTTTAAAGACATGGCACAGAAAAATAATTTAAAACAGTGCTTCTTGTTTGATCTGAAACCCACTTTAAAAATGATAAGAACAATAAAAAATTTACTATTAATGTATTTCATTTATTAAAGTATGTTCTGATTTTTTTATGTTTAAAACTTATGTTAATGAAAATAGTATATTTGTATATGTACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACTACTGTGCAAATTTAATTAATATAATATAATTTAATTTAATTAATATAATTTTTTTTTCTTCAGGTGTTTTTTTATTTGCTCACCAATGCATTTTTAATCAAAAATGCATTAAAAGTGATAAACAAAAATACTAATTAGGTGTTATTTCAATTTAATTTAAAATAACATAAAATACAGAAAACAGCTGGATTTTTATTTTCTGTCTGGAGATTTTTTAATATTGCATTTATATCTTTGATTTCAAACTAAACTAAACTAAATTTTCACCATCAGTATTGCACAATCCTTCAGAAATCATTCATTTGCTACATATTATTAGGTAAATAAACATCTACAAAATATAATTCATAATTAATTTTAATTTCAACATTTATTGCAAAACTGCTTGAAATCAAAAATTGAAATTTTATTATTTAATAATTATTAAATGCTGTTTTAGTGCCTTTTAAAGTGCAAGCACCATAAAGTTTTAACATTGCTCTTTATTTTTTTGCAG
Seq C2 exon
CTTGCCCGACACAACAAAGTGCTACTCACACTGCTTAAACCAGTAAAGAAGATAAAAGAGGAAGAAGAGGAAAGCATCTCCTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTGATTAAAAAGGCTT
R:
AGGAGATGCTTTCCTCTTCTTCCT
Band lengths:
184-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]