RnoINT0076766 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5704830-5705103:+
Coord C1 exon
chr20:5704830-5704931
Coord A exon
chr20:5704932-5705016
Coord C2 exon
chr20:5705017-5705103
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TCCTGTCCTGTCTTCTGCAGCTT
3' ss Score
11.38
Exon sequences
Seq C1 exon
GTGGACGTGATCAAGAAGGCCTACCTGCAGGAGGAGGAGCGGGAAAATTCCGAAGTGAGCCCACGTGAAGTGGGCCACAACATCTACATCCTGGCACTGCAG
Seq A exon
GTACCGAATCTGCCCGAGGCCCTGCCCCTCTGTGGCCACGCCCCCCGAGGCAGTGCCCATCGTTCTCCTGTCCTGTCTTCTGCAG
Seq C2 exon
CTTTCCAGGCACAACAAGCAGCTACAGCACCTGCTGAAGCCGGTGAAGCGCATCCAGGAGGAGGAGGCCGAGGGCATCTCTTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGTGATCAAGAAGGCC
R:
GGCCTCCTCCTCCTGGATG
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]