DreINT0083757 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21303534-21305890:+
Coord C1 exon
chr8:21303534-21303698
Coord A exon
chr8:21303699-21305700
Coord C2 exon
chr8:21305701-21305890
Length
2002 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
TCCTCTTTTACCTTCTTCAGCTG
3' ss Score
8.6
Exon sequences
Seq C1 exon
CTCATCAATAAGATAGTGTACTTGGTGAGCTTTGTGGGAAACAACGGCACCTTCATCATGGGTTATAAAGCCATGGTAATGGATGTAGAATTCCTGTATCATGTGGCTTACGTGTTAACCAGCAGTCTGGGGCTGTTTGTCCATGAGTTCTTCTACAGCATATTG
Seq A exon
GTGGGTGTCATGAATTACTATACACTATTAGTCACTTATACACTTATATAAGTGGTTGTTTTTTAAATACTTTAAACATGTATTTATAAACAGATTTCTAAAACTGATCAAGTGTGACTGTAAAGAAATTTATATTATATATAAATGTTTTAGTTTTGAAATTATTTCTTCAATTTAAACCTTAAATATCAAATAAAGTCCTTAATTAAAGTCCATTTTATTTCCCCAAAATAACAAACAAGAATAACAGTTTAATTAACCAGAAAACCTTTCTTCAGTTTGCATGTTATTCATGGTCAATAACGATTTATTACTATGAGTTATCACTAACAAAGCATTTTTAAAGCATTTGTTAATGGAATTATGAACCTTATTGTGAAGTGTACACTACTTTAACCTTATCTAATGTGTTACTCCTATTTTAACTAATGTGTAAATAATGAATTAATAACCTCCTCAATATATGATAAGTTTACATGTCAGATGTAGTTGTGCTGAATAAATGTGTTGTTAATTTTTAGTTCATGTTTTCTAATCCATGAACAAATGCATTAGTGTGTGTGTAAGTAAACAAACTAATTATAGGCTGATAATGTAAAAAGGTGCATTAGAATATGAGTATGTTAACATTAACAGAGATTATGTGATAAATAAAGGTTGTTTTTCACCATTAGTTCATATTAACTAATTTAATAAACAACACATTAAAATATTTACTGTTAATTCATGTTAACTAATGCATTAACTAATACAGCCATATTGTAAATTGTTTCCAAGCTGGTAAATAAAACAAATTTAGTCAATCTTTTAAAAAAAGATTAACAAATATAAAATATAAAAATGTAAACAATTTAAAATGCTGCAAAATACCTTTTTAATTTTTTAGTTTTGTAGAAAATAGATTGTTACTTGCTTTCAAGCACACAGCAGGTGAAGGGAACTAGGGTTGTGCTGATAGATGATGCCATTGTCCATCGCCAATGGCCGACAAACTTTACGATGCTGAGCCGGCATTGCGACCCATCACCCCGCCCCACATTTATTATGATATATAACTTATTATTTGCATGTCATCTTAATAGCAATAACGGTATTTTCATGAGCTCTGTTAAATTTTACATATAGCTGTCGCTTGCATGGCTGACAGCACCGTGAGGATTAATGAAGGATTATACAACACCTCTCGCGCTTAAAATGTGTAGATCCAGTAGCAAACGCTGTTACCTGCAAACCCCGTCCCACAGACTTTACAGTAAATGGCTTTAGTCATTTTTCAAAGCGGACTTGAAACCACTGGATGTGTTTTATCCACTCTTGGAAAAGTGTAAATGGTGGATTAACATTCACCACATGATCCCTAATAAGATGTGCCATTATTAGTAACTGTAGGTAAATCTGTTATTTTCATTTCCTCATCTTCAGTACAACTTCACATTTTCACAGTTGTAGCTCCTGTCATCTGAAGGCAGAAGGCATTGACTGAGTGATTGACGGCTGATACTAACCAATAATTTGCATTCAGTTCTAGAGCAGTGAGCCAATAAGAAGAGCCCAGAGGCAGGGCAAGCACTCTGGGCTTTTTTTACTTCAACAAATTCACATAACAACTGTTTTAATCTGTTATATATTATAAGCGGAGGGTAAGCCAAAGGAAGTCAAACGTAAACAATCCTCCAATGAAGTCTCTCATACGCATCTTTGCTGCTCCTTAAATAAGCAGTAAGATTAGCTGCACCTGCTCATAATGGTTCACCTATTAAGAAAAAGAAAGCAAAAGCCAGGAAACAAAACGAACCAATCACAAACCTATAACAAAATATTTCTAAACCACAAAAAAGCACCAATTGTGGGTAATAAATGCTATTGGTGAATAAATACAATTGAAACACTTTAGCTACTCACAAGAGGAAATTTGACATGACTATGTATGACTTAAATGCACACTATATGATCTTCTACCTATCCTCTTCTTCACCTCATTTTCCTCTTTTACCTTCTTCAG
Seq C2 exon
CTGTTTGATCTGATCTACCGTGAGGAGACACTGTTTAACGTCATCAAGAGTGTGACCCGTAACGGCCGCTCTATTCTCCTCACTGCTGTCCTGGCCATCATTCTGGTCTACCTGTTCTCCATCGTCGGCTTTCTCTTCCTCAGGAATGACTTCATTATGGAAGTCGACCACCTTGCTAGCCCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(23.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]