GgaINT0141553 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4444472-4445369:-
Coord C1 exon
chr26:4445205-4445369
Coord A exon
chr26:4444728-4445204
Coord C2 exon
chr26:4444472-4444727
Length
477 bp
Sequences
Splice sites
5' ss Seq
CTGGTACAG
5' ss Score
3.91
3' ss Seq
TTGCTCCTGGGTCCTTTCAGCTG
3' ss Score
8.42
Exon sequences
Seq C1 exon
CTGACCAACAAGATTGTGTTTGTGGTGAGCTTTGTGGGTAACCGTGGGACCTTCATCCGAGGCTACAAGGCCATGATCATGGACGTGGAGTTTCTTTACCACGTTGGCTACATCCTGACGAGCGTCCTGGGGCTCTTTGTGCATGAACTCTTCTACAGCATCCTG
Seq A exon
GTACAGTAAATGTTTGGGGCACAGACATAGCCAGGCTGCGTTGTTAGGAGCTAGAAGTTTCCTGCGACACCTTCCAGGCATTGATCGATAACAGCAGTGAGAACAATGCCCCGTGCTCCAATATTTGCGTAGGCTGATCTTTCTGCCTTCCAACAGCATCTATTACTGTCTCTCTCCCAGCCTTTTTCTATCACTCTTTTTCTAATCTCTGCTGCGTACTTTATCTGGGTCAGCTGGGAGACAACGTGAGCTGGTGAGGGCAGAGGCAGGGGGCATGCGTCCTATTCTTGGCTCTCCTGCTGTGCTTAAGTTCACTTCATTCTTCTGCAGTAAGACGGAAAACTTGAGTACTTTATGTGAAAGTTAGTCTGTGTCTACTGAGTGATCCTAGATCTCGGGATAAAAGGGGCATAGGTAGGCCAGGCATTGTCACAGAAAAGCACCCTGCAGCATTTCTTTGCTCCTGGGTCCTTTCAG
Seq C2 exon
CTGTTTGACTTGATCTACCGTGAGGAGACCTTGTTTAATGTCATCAAGAGCGTGACGCGAAACGGGCGCTCCATCCTGCTGACTGCCCTCCTGGCGCTCATCCTTGTCTACCTCTTCTCCATTGTGGGCTTCTTGTTCCTGAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCGGACAGCAAAGCCCAAGGTAAGCCAAGCCATGGACTGCTGTCCTTGGTGCTTGGGCTGGAAGGGGACCAGCAGAGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(23.2=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(36.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGTGAGCTTTGTGGGT
R:
TTACCTTGGGCTTTGCTGTCC
Band lengths:
344-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]