DreINT0084883 @ danRer10
Intron Retention
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:20985434-20989436:+
Coord C1 exon
chr19:20985434-20985668
Coord A exon
chr19:20985669-20989278
Coord C2 exon
chr19:20989279-20989436
Length
3610 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CTATTCTGTCACTTCTCCAGACA
3' ss Score
8.47
Exon sequences
Seq C1 exon
AATGTGTTTGGGGATCCACCCGCTCTGCCTGAATATAAAGTCGCTGATGCCAAGAAATCCAAGTTCATTCTTCTCCACTTCAGCACCTTTAAAGCAGGCTGGGATTGGCTGATCCTTCTGGCTACCTTTTATGTGGCTGTTACGGTGCCGTACAATGTTTGTTTTATAGGTGATCAAGATTTGACACGCAGCACCACCGTCACTGACATTGCTGTTGAGATACTCTTTATCATTG
Seq A exon
GTAAGACATTATTTTTAGTTGGTCCATTACATAGTACATTTTTCATTGTGAGCATGATTATGATTTATGTGATTATATTACATCTGTATCTTTATATATGATTAGAATCAGGTCTTTAAATCAGTTTCATGGTCTTTGACTTCCTCCATTAACTCAGTCTTATACCACAGGGAAACACACTGCATCATTCTCCTTTAGTTGTGGTGCATTGGAGAAAAAAATATACTGTGTTATTGGAATTAAAAAGGGTAACTTGTACAAAAATAAATAATTATTATTTTTTTTTAAACAGAAGTTGTTTAACCTTCTTTTGCTGTACATAAGAGCATATTTTTATATACTCTTAACCACCAGCAGTGTCACAATGGCATAAAGTAATGGAAGATCACCATAAACCCTGGTTATTTATTTATTAATGATTATTTTATTGTGTATTTGTATTTCATTATTTGACTTATATGACTATTTTTAGGCTCTGGTTGGTTTATATTGTGATGATTAATGATACTGTGATACTGGGGAATTTACTGGTTGTATTATGTGGTTATATTTCTGTTAAACTAAAGGCAAAGAAAAAAAGACATTTGACATTTTAAATTCACTCCACGACTGATGTTTTGGAGTTTTACCTTAAATCCCCCTTGCACTCATGCTGTGCTTCTTAAATTGCACTGTTATTTATTTTTTTCTGCATCTTTGTGAGCTTAAATAGATGTCTTTGTTCACAGATTGTTTGCAATTTTAGAATAGCATGAGCCGTAAGGCATGCTGATCCCATGCTGTTTAAAAAATAAAACGTGTTATATAGGGTGACCGGTGAACACGTGGTTATTGTTTTGTTGAGACTGAAGGTGTCGTTGTATATGGGGAGAGACATGTTTAGGCAAAATATGAAATATCTTGGATGTATTTTTACTGAGTAAACCACTATTTTGCAGATGGGGTCAAAATGACCTCAAAATTTGTAGACAATTTTCAGGGCTGTGAAAATGACTTTAGAAAGATGGCAGAATCGTTATGTTGTTATTACACAGAGATTGGTTGGGTTATTAGTGAAATCTGTTGACTTTTGCAGTCTTTGTTTCATCATATGCCAATTGTGACAATTTGAAATAGGAAAAAGTACTTTTTTTGGGGATTGTTCCAACATTTGTGAGCCTGCAACATGACGTATTACAGATATTATATTATACTTTTTTTTTTAGATGATGTTGTTTTTAACAAGCATTTCTTTTTTACTATCTTCAATTTTAAAGCTATATGGTGGTCATTTCCAGAAATATAGGAATGTCAATGCGATGTGTAAATACACATAACCAAAAAACAAACATGACCCCAATTGGCAAACACATCTTTAAAAAAAATAGGTAACACTTTATTTTGATGGTCCATTTGAGTATTAGTCAGCTTAAAATCTGTTGATACTGCTTCTTAGACAGACATTTAACTGACTATAAGAAACTTTGCAAGTACATATCAACTTACACTAACCCTAACCCCAACCTAACAGTCTAATGGGAATTAGTTGGCATGTAGATGCAATGTAACTAAAATTCAAGAAATGGACCATCAAAATAAAGTGTGAGCAAACAATAATGTATGATGAACAAATCACTTTGAAAATAGAAATTTTCAAGTTCTCATCAAGTTCTATCAGATATAGATCTGGTGACTGTGAAGGCCATTTGAGTACAGTGAGCTCATTGTCATGTACAAGAAACCAGTCTGAGATGATTCCCGCTTTATGACATAGCAGGTTATCCTGCTGGAAGATGTCATTAGAAGATGGGTACACTGTGGTCATAAAGGGATGTACATGGTCAACAACAATACTCCGGTAGGCTGTGGCACTGACATGGTGCATAAGTTGGTACTAATGAGCCCTAAGTGTGCCAAGCAGCCTGAACCATTAATACAAGGCAGGATGGATCTATACTTTCATGTTGTTGACACCAAATTCTGACCCTACCATCTGAATTTTGCAGCAGAAATCGAGACTTGTCAGACCAGGCAGCATTTTTCCTCTATTATTGTCCAATTTTGGGGATCTTGTGTGAAATGTAGCCTCAGTTTCCTGTTTTTAGCAGACAGGAGTGGCAACTGGTGTGGTCTTCTGCTGCTGTAGCCCATCAGGGTTGGATGTGTTGTGCTCTTCTGCATATCTCGGTTGTAGAGAGTGGTTATTTGAGTTACTGTTGCCTTTCTATCTAGAATCAGTCTGGCCATTCTCATCTGAACTCTGGCATCAACAAGGCTATTGCTCCAACAAAACTGCCGCTCACTGGATATTTTCCCTTTTTTGGACCAGTGACTGTTAACCCTAGCGATGGTTCTACTTGAAAATCCCAGTAGATGAGCAGTTTCAAAAAATACTCAGACTATCCCATCTGACACCAACAACCATGCCACATTCAAAGTCACTTAAATCCCTTTTCATCCCCATTGTGATGCTCAGTTTGAACTGCAGCAGATTGTCATGACCACATGCCTAAATGCATTAAGTTGCTGCCATGTGATTTGCTGATTAGACATTTGCGTTAACGAGCAGTTGGACAGGTTTACCTAATAAAATGAGTGTAGATTGGTCTTCTTACTCAAATTGTTGAATTTTACCCAGTACATCCAGCCTGTATTTGGTGTATTGAAAGAATGATGTCTGGAAAATCAATACTATTTCAATCTGTCTTGTTTCCTTCTATAAAATTTATTAAACACCACATGCCTCTCTGTGAGGCTATTTTCCCCCATAACATTGTATGCCTGTAACTCAGTATTCAAGACTTTAAATTCATTTTAGATTTTTTTTCAAAAGAAACTTTCCTTTTTGAATCTTCATTTTTAAGACCTTAAATGATTCAGTCCTGGAAGTATTGGGATCTCAGGGCTGTAAAATAAAGTTACAAGACTGCATTTTAAAACTCTTGGTAGCTTCAAAAGCTGTCCTTCTTAAATGTCTTGGAAACTAATTTAAATACAAAATCAAAATACTAAGAGCAAGTTAATGTGACTCTTCTAGACCATTTCAATATGTTTTTGGCAGTCAGTATGTTCTATGCAGATGTATTGGATTGCACTGAATCTTGAATTACAGGTACATAAACTTTGCAGAAAAAGTTTGTCCACCCCCATTTTGAACTGTCAACATGAATATTTTTATGCAACAGAATTACCATAACTTTCATTTTTCCACAAAATGTTGGATTATTCAGCAAATCCACATCCAATACATTTAATAGTTTGGTTTTTTAGAATTAAATAGCAAGATTGTCGAAACATTTGTAAATGAACCAATTGCAAAAACACCAGTAATAAAATTATGTTAATGTTTTTTAACACTGATCCTTAAATTTTATTTTGGATTTGTGACTTTGATAATAACTATTATAAAAGCCTGGTGATTATATTTTGCTGACAGTGTATTGAGTGTGACTTATTCTTTCTTCATTTTGTTCTCTGTGATAACACTTGATATATCTGGCAGAAAAGAAAATTCTGTTAGAATTGCTTTAAAAAACACTGTGTTTTTTCATGGAGATTAAGCTGGTGGTGTTTTTTTTTTTTTTTTTTTTTTGGTAAGACGCTTACTCTGTCTATTCTGTCACTTCTCCAG
Seq C2 exon
ACATCGTGTTTAGTTTCCGCACGACGTATGTGAGTAAGTCTGGGCAGGTGATCTTCGATGCTCGGCAGATCTGCATCCATTACATGACCACCTGGTTCATCATCGACCTGGTTGCTGCTCTCCCCTTTGATCTTCTTTACGCTTTCAAAGTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640:ENSDART00000090810:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=PD(83.6=77.2),PF0052026=Ion_trans=PU(5.6=15.2)
A:
NA
C2:
PF0052026=Ion_trans=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]