DreINT0090609 @ danRer10
Intron Retention
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36546945-36551464:+
Coord C1 exon
chr9:36546945-36547058
Coord A exon
chr9:36547059-36551335
Coord C2 exon
chr9:36551336-36551464
Length
4277 bp
Sequences
Splice sites
5' ss Seq
GCTGTAGAG
5' ss Score
-10.36
3' ss Seq
GACTCTTCCTCTGTGTACAGATC
3' ss Score
9.2
Exon sequences
Seq C1 exon
AACTCCTGTCAGCCTGTCACGAGCTGCACTGCCGTTACGGATGCATCATGACCAGAAACGGCACTTTCTGCTTCTGTGCCGATGGCTTCGAGGTGGGAGAGGATGGGCGTAGCT
Seq A exon
GTAGAGGTAGGCCTTTTTCAGGGTCACAGCAGGCATTGCAGATGAATGATCCGCTTCGGGCGATGGGTTGTCCTTCCCTGGGGTGTCTTTCTTTTCACACCTCCGTCCTGCTTTATTTGATGCGTGGCATCGATTCCGTAGAGGTCGAAGTGACTTCTTGGTCGGGTTTGACCTAAATGAGACCCTCAGAGCTTTAGGCATATGATGGTGTCAAATTTTTCTGGTTGCCATTATTCTGATGCTTTGATCATGGTATTGACATCAAATGCAGGAACCCAGCAAGCATTTTTTTTTGTTTTTCAAAAATGTCTAATAGACATCCATTAGAAATCTGAACATAGTCATCTTGGCTAAAACAAGGCTACATTTGGGCTGGCAGGGAAAATCTGATAGACGTCTAAGAAAAGGCCAAAACTAGTCATCCAATAAACAGAAATGAATATAAAGTCTGTCTAATCGGTCTATTTGACGACTAGTCTAGTTTTGGGCTATTCTTAGATGTCTATTAGATTTTCATTGACAGCCCAAATTTAGCTTTGTTTTAGCCAAGCTGTCTATGTTTAGATGTCTATTAGGCCCTGTTTACTCTGTCAGGTCTTGATGCCCAATTCCGATTTGTTGCCTAAATCTGATTTGTTTGCCTGTCTGTTTACACATTCTTTTAATTGTGACCCATATCCGATGAATGTGTTTACATATGCTATACAATTTACGATGTATATAATTTACGCGTGCATAAAGTCGGGTTCTAGCATACACACCACACTAGTCACAATAGCAGAAATGCTTTTAGCTCTGTGAAATTAGCAAAAATTGTCCAACTTTATTAACTTTATTAAATTATTTTGAATGCCTTAATTCTAATCTGCCTGTTTACATGATAGTCACATTGTCACATATCGGATTTATGTCTGATTTATTTCCACATATGAAAGAGGCCTGAAACTGATCTCTGAATGTCCAAATGCATGCATTTTTTTGTTTACGCAGTCATAGAACAGATCTGATCTGTCACATATGATCAAAAAATCAGATTTGGGTAACATTTAACTGGCAGTGTAAATGGGGCCTTAGACGTTTATTAAACACAAAAGTATTTCGTGGGAATGGTTATTTTGACCCTATTAAACAATATTTAAGGGGGAAAAAATACCGTAGGGAAAGTCAATGAATAGATCACCTAATGATTGTCTTCCTAATTTTTTCTCCTTTTTTGTTGAACAAATTCAGCTTATTGTAGATTTATTTGGGGCTTGACTTTTATTTTAGTGTTAGAAATAGTGTAAAAGAGATAAAGAGATAAGAGATAAAATTGTGTCATCATTTACTAACTCTTGAATTGTTTCAAACCAGTTTTTTTTCTTTTCTTTTTTTTCTGTTGAAAACAAAAGAAGATATTTTGAAGATATCAGGAGTCAATGCTTACTAGTTTCCAGCATTCTTCAATATATCTTTCTTTGTGTTTAATGGAGAAAAAATGCTCAAAATGGATTGGAGCAAGTCAAGGGTAAATAAATGATGACAGACTTTCATTTGTTGATAAATTATAATTTAAAATATTTAAGTAATAAATAATTTATTTGAAAGAAATTTGAGTGAAATTTAAAAATAGCAATTGTCTTTTATGTATATAATTTCATTTATTTACTTATTTACTTAAGGGACATTCTACCAGAAACCTACATTTTCACTTATAAAAGATGTGTCAGGGCCTGACTTGTCATCGTCAAAAAATCATACAAAAACAAGCATAAAATCATACAGTTCAAAGATAGAACACATCCTTGATCACTGTCACCTTCTTCTCCGTCAAAAGATGTAACTTCCGAGTCATAGCCTTAAAGGTGTTTTGCACACATTTTATGATACATTTAATGCAAATATGACAGGACTGACAGAAACATTTATTTGTATTATGTATTATACAGTGCATCTGGAAAGTATTTATAGTGCTTCACTTTTTCCTCAAATTTTTAATGTTACAGCCTTGTTTTAAATAGATTAAATTCATTTATTTCCTCAAAATTCTATTTTTATTTTTTTAATTGTTGCAAATTTATATATATATATATATATATATATATATATAAATATATATATAAACTCACATAAGTATCCACAACCACACCCTTGAGCTCTAAATTGAGCTCGGGTACATTCTGTTTCCACTGATCATTCTTGAGATGTTTCAGCAGTTCAATTGGAGTTTACCTGTTGTAAATTCAGTTGATTGGACATGATTTGAAAAGGCATACACCTGTCTATATAAGGTCCCAGGGTTGACAGTGCATGTCAAAGCACAAACCAAGCATGAAGACAAAGGAATTGTCTCTAGACCTCCGAGACAGGATTGTCTCGAGGCACAAGGCTGGGGAAGATTACAGAAAAAATTTCTGCTGGTCTGAAAGTTCCAATGAGCACAGTGGCCTCCATTATCCGTAAGTGGAAGATATTTGAAACCTCCAAGACTCTTTCTAGAGCTGGCCGACAGTCTACGCTGAGTGATCAGGGGAGAAGAGCCATAATCAGGGAGGTGATCAATAAGCCGATGGTCACTCTGTCTGAGCTCCAGCGTTCTTCTGTCGAGAGAGGAAAACCTTATAGAAGGACAACCATCTGTGCAAAAATCCACCAATCAGTCCTGTATGTTAGAGTGGCCAGACGGATGCCACTTCCCACCTGGAATTTGCCAAAAGGCATCCAAAGGATCTGGTCTAATGAGACTAAAATCAAACTCTCTTGAGTGAATGCCAGGCATTACGTTTGGAGAAAACCAAGCATCGCTCATCACCAGGCTAATACCATTCCTACAGTAAAGCATGGTGGTGGCAGCAACATGCTGTGGGGATGTTTTTCAGCAGCAGGAACTGGAAGACTAGTCAGGAAAGAGGGAAAGATGAATGCAGCATTGTACAGAGACATCCTGAATGAAAACCTGCTTCAGAGTGCTCTTGAACTCAGACTGGGGTGATGGCTCATCTTCCAGCAAGACAGTGACCCAAAGCACACCGCCAAAATATCAATGGAGTGGCTTCACAACAACTCTGTGAATGTCCTTGAGTGGCCCAGCCAGAGCCCAGACCTAAATCCTATTAAACATCTCTGGAGGAATCTGAAAATGGCTGTACACCGTCGCTTCCCATCCAACCTGATAGAGCTTGAGAGGTACTGCAGAGAGAAATGGTCAACATTTCCCAAAGACAGAAGTGCCAAGCTTGTGGCATCATATTCTAAAAGACTTAATAAATGTGCTACAATTAAAATTTTGTATTTTTACATTGTCATTATCGGGTATTGTGTGTAGAATTTTGAGGAAATAAATAAATTTAATCCATTTTGGAATAAGGCTGTAAAACATGGAAAAAGTGAGACCTATGAATACTTTCCAGATGAACTGTACATTTGTAGTATTTATTTGTAAAATGTATTTATAATTTCATGTTTTTAATAAATTGATGTGAATGAAAACAAATTAAACTTGCTATTTCAGATTTGAGTTATTTGTTTATTTTTGATTTTTTTGTCTAAATAACAGTTTTTAGCACATCAATACTATTAAAGCTGTAGGTCCATTTGGGCTAAGGAGAAGGACAATAACAGGGTTTGTACATGTATAAAGTGTTTTTAATAAAGAACAAAAATCAGCGAACCAAACGAATTAAATATTCCTTCACATAACAACTCACAGAAATCAACCATCAGTCCATTATAGAAATGTTTTTTGGGATGTAATACTTTTTATTTACTGCATTTATGTTGTTATTTCAATGTACGTTTCTGGTAGAATATCCAAATGTTACTATAAAAACTGCTAAAATGTAAAATAATCACCTACTCAATTTAATGACAATGACATTTTTAATTAAATTGTTCTTAATTTTAGTGGTTCATATAGTTTGTATAATTATTTTTAGCATATAAACTAAAAATCTATATATATATTTTTTTCTATTCCCATTTTCTAAAGCTTAAATTTTTTTTTACTCACCATTTGTTTGAAAAAGAGTATCTGACTCCTATGAAATACAATAAAATAAAATAAAATCATTGAAGAATGGTTCTTCTGGAAAATCAACCAAGACAAATCAGTAACTCACCACTGGACCATTAGCTTAAACAGGCAGATCTCTAGAGAGCGGTGCAAGACAGGACTTGCCCGGAGATATGAGGTGGCACAGGGAGAAGCCACCGAGAGGCCACATTAAGTGGATTTTATGTATTTGGGTCATGTTTGAGCACACCTAATTTGTCATAAATGACTCTTCCTCTGTGTACAG
Seq C2 exon
ATCATGATGAATGCGCCATGTACGGGACGTGCAGCCAGACCTGCATGAACACCTACGGGTCATTTCGCTGCAGCTGTACAGATGGGTTCAGCCTGCAGCCCAACAGACGCTCCTGCATCGCCAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517:ENSDART00000139033:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PU(94.1=84.2)
A:
NA
C2:
PF146701=FXa_inhibition=PD(0.1=0.0),PF146701=FXa_inhibition=WD(100=79.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]