DreINT0091659 @ danRer10
Intron Retention
Gene
ENSDARG00000026281 | lyrm1
Description
LYR motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-210]
Coordinates
chr24:39626348-39630783:-
Coord C1 exon
chr24:39630700-39630783
Coord A exon
chr24:39626507-39630699
Coord C2 exon
chr24:39626348-39626506
Length
4193 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACG
5' ss Score
7.74
3' ss Seq
TATTGTGCTGATGTTCACAGAGG
3' ss Score
5.88
Exon sequences
Seq C1 exon
GAGGACGTCATCATTTGCAAGCACGTGGACGGCGGAGTACGGAAGTGCGGAGATGCTCGCATAAGCTGATGTGAACGCACATAG
Seq A exon
GTAACGCTCATTTAGAGTTCAGCTAGAATTATTATGTAGAAAACAAAAGGCTGTTTAATTATAATGCTTGCCAGATATTCATGCGATAAGTGCAAATCGCTCATTGACAGCGTATCCAACATTATTATAGAGGTCACGCAAACCCTGTCACGCGCTTCAGGTCACTGTTGGTGTCTGTTTTTGTTTTGTAGTTAATGCTAGATGAAGATTTGAACATGATTATGATGATAATTAGCTATAGTTATGGTTAAAGTAACATTCTGACACCTGCCAGCAGTAGTGGAAAGATATGGAGTCAATCTAGGGTCATATATACCTGCAACATGAAGGAAAGTTTTGCAAACAAAAAATAAAATAGAAAAATAATGCAAATGTCAAAAAAAAATGCTATATTGAGTTTTGAGAAATAAAAAGGAATTTTGCAAACAAGAATAAAGAACTGTAAATAAAAATCAAGTAGTGCAAAGAACATTTTATAATTGGGATAAATTATACATATATTTGCTAAATATTTGTTTTCCAGTATTGCCTTTACAAAACCTCTCAAGTCAATTGCAATGTGTACAATGCTCATTTTGATTTGCTTTTCAGTCAACCGTGAGTTTGCAATACTGTTTTTTTTTTAATTGCACTTCACATTTTTATCTGCATTTCACTTTCTGGCCCTGATTTCAAAAGGGGGCGGAGACACTGGAACTGGGGCGTGTACAGCATGCCCAGACATGCCTCCTATGAACAAGTAGGTATTGCTGTAGCCCGAAGACCTCCAAGTGGGAGGGATTACCCCGCAAGTAGGTTGGGTGACCTCCAAGTGGGAGGGACTTAAACCACAAGTAGGTTGGGTTTAAGTGGTGTAGGTGAAGTAGATCTTAATAAAACACATCAGGTTACTGTGAGGTTGGGTTTAGGGTTAGGTGTACACATTCATAAAGCACAATATTGAACTCTAAATACAACTAAATAAGGTTTGCACAGCCCACTTGGAGCTCTAAGGCCCACCCACTTGGAGCTGGCACCGACCTCCATTTATACCCTTCTCTTTTTATCTGCATTTCACTTTCTGGCCCTGATTTGAAAAGGGGGCGGAGACACTGGAACTGGGGTGTGTACAGCATGCCCAGACATGCCTCCTATGAAGGAAATCAGCCATGATGATCAATCGTTGTATTAAGTATTTTATACGCTGTTTGGGGGGCTGTTTAAATCGTCAAAGACTAAAACCCGCAAATCAAAATGAGCCTTTCAACTGACTTGAGAGGTCTTGTAAAGGCAATACTGAAAAACAAATATTTTTGCTAATAATAATTATTTTAATATACATAAAAAAACGCAAATGTATTTTTTTTTTTTGCAAAATTCTTTTTTTATTTTCCAAGAGCTCATTTTTTCCTTTGTAATTTTTTTTGAGATTTGCATAATTTTTCACAATTTTTGCTAAATACTTAATTTTGTTAGCAAAACTTTCGTTTATGTTGCAAGTATATATGGCCCTAGATTGACTCCATAGAAAGAGTACTGAAGAATCATACTCAAGTTAAAGGACCATTACTTGCCTAAAAATGTAGTGCGAGTAAAAGTATCTGTTGTAAAAATTTGTCAAAGTTTAACTCAAAGTATGAATAAAAAAGTAGCCCTTTTAAAAGTACTCAAGAGTAGTGAGCATTACACTGGGAAAAGCTGATGTGTTTACATGTCGTTTGTGGTTGTGTGTGTAAACGTAACATTCTGTAGTGCGTTCAGTTATTGTCCAGCAGGCACACACCGTCATAAGACGTCAATATTAGGTTAGATTTAAGTTGTGATGTCAAATAACCAAAATTCAATGTCTAGCCAGCGTCTAAGGACAATGTTATTTTAATGTCCAATAATGACATCAGATGACGTTGATATGTGATTGGTTTTAGGTTGTGTTAGAAAGTGACCAAAATCCAACGTTGAGTCAACATCTTAAACCAACATTATATTGACGTCAAACTCTGACATTTATTCGTCAGTTATGACAACCAAAATCCAACATCTGATAGACGTCATAGTGGTAACATCCATGCAACATCAAGCTGTAGCATCAGTAGACGTTGATATTTGGTTGATTTTAGGTTGGCTGTTAGACATTGATGTCAGCCCGAAGTTAGGTTCTGATGTCAATGTGATTTTGATGACAAAATGCAACGTCTCCATGACGATGGGGTACAACATCAATCTGACATCAAGTTGACGCATTGTGTCTGCTGGGTGTTTAAGGCCATTTCAGTCATCTTAAAGTAAACATCCGTCATCTTCCCATCAGTGACATGCATCTGAACAGTCTCTAAGCCAATGTGTGTAAAGATTTTGGACATCTTCTTGGACACTTTTAATGCTTTCAAACAGTTTGCTGCAATTATAAATCGCCCATGCCTTGAGGTGGTTCAGTATGATGTGATTTACCTTCTGTGTGATTGGATTGGACGGGAATCACAGGACTGATTTTTCGAATCCGCATAGACAGGAAATAATAAAGCAGTGATGCAGGTTGAAGGACAGTAGTGGAGTAAAAGTAAAGATACTGCACTAAACATGTACTCAAGGGAAAGTAAAAGTACACATTATTAAAACTACTTAGTATTTACAATTCCTGAGAAAAAGTAATTAATTACAGTAATTTGAGTATTTGTAATTAGTTACTTTACACCACTACCTGCCAATGGCCAGAGCAACACATTTAATTATAGACGTAACATCTTTACAATTTGATAATGGTCCTAAACCTCATCACATTCGTGATCGAATGAATCAAAATAATATACCAACACTAATTTTAACTTGCCTTTAGTGTTTGACTGTGTTCAAAGCCTTAATTCACTTTTAAAAAATACTTTACTCAAACCTTTATTTTCATTTATCAGTGGAACACAAATAAAGATATTTTGAAGAATGTTTGTACATGGCAACCACTTACATTCAAAGAAAAGAAAATACTAGAGAAGATGATGTCTGTATTTTCTCCCAACATGTCCAATCAGGATGACTGAATCATTTGACTTTGACAAACTTTATTGTCATTCAAATGTACTGGTGTACACAGAATAATTAAGAGTTTTTACAGAATAACCCTAATCAATAAGTAAATAGATAAATAATATAAAAATGATCATATACACAGCAGCTAACTGACGACTCTAATCATCAGGTGAATCTGTAGTGCAAGTCATAATAGTGCATACAAGTTATAGGGTGAGACAGAAAATGTAAAAAAGAAAAAAAAAGTGACCATTAAGAGTTAAGATCACAACAGATAATAATAAATATATTTATTAACAGATAAATAAATAATAACACTTCATTTTTTGTCTGAACTGTCCCTTTAAGTTTAGGGTTCAGTATACACTCACTGGCCACTTTATTAGGTACAACTTACTAGTACCGGGTTGGACCCCCTTTTGCCTTCAGAACTGCCTTAATCAGAAGATGAGTACACTGTGCTCATAAAGGGATGGACATGGTCAGCAGCAATACTCAGGTAGGCTGTGGCGTTGTCATGATGCTCAATTGGTACTAATGTGGCAAGAAAATCTCCCCCACACCATTATACCACCACCACCAGCCTGAACCGCTGATACAAGGCAGGATGGATCCATGCTTTCATGCTGTTGATGCCTAATTCTGACCCGACAATCCGAATGTTGCAGCAGAAATGGAGACTCATCAGAGCAGGCAACGTTTCTCCAATCTTCTATTGTCCAGTTTTAGTGAGCCTGTGTGAATTGTAGCCTCAGTCTCCTGTTCTTAGCTGACAAGTGTGGCCTCTTCTTGTGATGCTCAGTTTGAACTGCAGCAGATCGTCTTGACCATGTCTACATGCCTAAATGCATTGAATTGCAGCCATGTGATTGGCTGATTAGAAATTTGCATTAATGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCGGTGAGTATGTCGAAATAATAATTATGATGAAGCGGTTAAAGTACTTATATTTAGCATTTTAATTTCAATTAAGCAATAATTTAAAGTAATTATCAAAATGTGGAATTTTTATTAGGGAATAATTTGAAGCGTCATTTTGAAGTTCTAGTGAGCTCAAAACAGAACAAAACAAAACAAAAAAGAACTTATCACTAATCAAATATGAAATGACACATTTAGTCAGCTCCTCTAACATGTGTTATTTATTGTGCTGATGTTCACAG
Seq C2 exon
AGGGTCCAGATGTCTCGTGCAAATGTGCTGTCTCTGTATCGGCGGGTTCTCCGCATTGCACGCAGCTGGAAGGCTCAGTCTTCAATACCAAAGGACACTGACACTGAGAAGAAATACATCACGCAGGAGGCTCGAACCCTTTTCAGACAGAACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026281:ENSDART00000031486:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.390
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0226314=GBP=FE(57.8=100),PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]