Special

HsaINT0097940 @ hg38

Intron Retention

Gene
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr16:20911183-20915714:+
Coord C1 exon
chr16:20911183-20911264
Coord A exon
chr16:20911265-20915555
Coord C2 exon
chr16:20915556-20915714
Length
4291 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTATTTTGGTGGGTCTGAAGATG
3' ss Score
2.52
Exon sequences
Seq C1 exon
GTGAAGTAGTATTTGAAGCTTTTCATCAGTTGGCTCATTCTTTACTCAAGAATAAACCTCAAGAAACGTCATCAGGGTCAGA
Seq A exon
GTAAGTGCTCATATTGGAAAGAGAAATTCTCTGTAAGTTGAATTCCTTGCAAGTACTTAGAATTTTGAGGTAAACGTGCCCACTTCCAGCTCCAATCTGCATTCTTTAGCTGCTCAAATTCTCATAATTTCAGGACTACCCTAAAGCATATTATCTCCACCTCTTATGCCTTTCCCTCCATAAGTTGAAAATGGATCATGTTCCCAAAAGCAAGCAGTGAGCAGCTTACTTCCCGATCCTGATGAGCCTGTTAGAGGAAAACCCAGAACTCAGAATGAGGTGTCCAGCTGCCTGGCCTTGCTACTTACTCACCAAATCTGCCCTCCTTGTCTTCCCACCCTGTCTTCTGGTTCAAGGCTGTACAATATTCATTGTTCTAATTCTGACTAATCAGAATCTTCCAGTAGTGGGACTTTTTTTTTTCTAGCTTCCCTGAATTTATTTTAGATATAGAAATGTAAATAGTTATGAAAAAAGGAGAGGGGGGGCTGAAATACTTTGTTTTTTCATTTTTATAGAGATAGGGTCTCTTTATATTGCCCAGGCTGGTCCTGAACTCCTGGCCTCAAATGATCCTTCCATCTCAGCCTCCCAAAGTACTGGGATTATAGGAATGAGCCACTGGAGCCAGCCTGAAGTTTTTAAATAAGTTGTTGGGGTTTGCTTGTTTGTTTTTGAGATGGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGGGGCTCAGTCTTGGCTTGTAGTGCAATCTCAGCTTACTTTAGCCTCCCGGGCTCATACGATCCTCCCACCTCAGCCTCCCAAGTAGCTAGGACTACAGGCACATGCCATCAGCCCTGTCCAATTTTTGTATTTTTTTACAAAATGAATGTTTTGTTAAAAACATGTTACCGAGGTGGGTCTCAAACTCCAGAGCTTAAGTGACCTGCCTGTCCCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACGTGGCCTTAAATAAATTTTTGTTGGTATTTTTGGGTTTTTTTTGTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTAGAGTGCAGTGGCGCAATCTCGGCTCACTGCCAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGATTAGCTGGGACAGGCGCCCACCACCATGCCCGGCTAATTTTTTTTTGTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTTGATCTCCTGACTTTGTCATCTGCCTGTCTTGGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCGGCCTTAAATAATTTTTTTTAAAAAGGAAACACCTAATATCCATCAGCAAAATAGATAGTACATTGGGATATCTTCATACAGCAGGCTGAATTGCAGCACTGAGAATATATGAACCAGAGCCATGTGTAACAACATGGATGAATCTTATGAATGTTATGGGCAAATAAAGCAAATTGCAGAACTTACCTATAAACTTTTTAAACTTGCAAAGCAGGCGGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCATCTGAGGTCAGGAGCTCGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACGAAATTAGCCAGGCGTGATGGTGCGCACCTGTAATCCCAGCTAATTGGGAGGCTGAGTCAGGATAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAAAGCGAAACTCTGTCTCAAAAATAATAATAATAATAATAATAATAATAATTAAATAAATAAATAAAACTTGCAAAGCAATACTATAAATGTTATGTGTAAAGATATGCACAATAAACAATAAATTCAGCATAGTGATTCCTTCTAGGAGAGGAAGGGAAATGTTATTTGGAAGGGGTACAGTGGGGGTTTCTACTGGATACATAATTTATTCTTTAAGGTCTGTTGTAACTGTATGGCTATTATATTGGTCTCAGTATCTTTTCTTTGTTTTTTTTTTTTTTTTGGAGACAGAGTCACTGTTGCCCAGGCTGGAATACAGTGGCGTGATCTTGGCACACTGCAACCTTCACCTCCTGGGTTCAGGTGATTCTCGTGCCTCAGCCTCCAAATAGCTGGGATTACAGGTGGTTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTTACCTCAAGTGATCCACCTGCCTCGGCCTCCCAAACTGCTGGGATTACAGGCATGAGCCACTGTACCTGGCCTCTATATCTTTTTGTATCTGAAATATTTTGTAATAAGAATTTAAAGATACTGGGAATTATGCTTTTGAAAAATACAATTAGCTTTACAGAATATACCTACGTCCGTTCTCTCTTGGCCACATCTTCTGAAATTAAAACTGATGTTTGAGACTAAAAACCCAGAGGGGCCTTGAGATCTTCAGTCATCAGAAAGATTTTTTTTTTTTCTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCCGGATCTCAGCTTACTGCAAGCTCCGCCTCCCGGGTTCATACCATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACGATAGGCACTCACCACAACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATAACAGGCATGAGCCACTGCACCCGGCCAGTCATCAGAAAGATTTTTAATTATACTTATTGGACAAGAAAGTAGACCAACGATTTTGAGAAATATTTCCAAAAAGGTTGTGACAGACTAAAAGAGAGGTTGCAACCTGACAACCTCTGGGTGGAACTGAGCCTACAGACTCATTTTGTTTGGCCTGTACAGTCGTCACTTTTTTTTTTTTTTTTTTTTTTCTTTTTGGAGACGGAGTTTCACTCTGTTGCCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTGCAACCTCTGCCTCTGGGGTTCAAGCAATTCTCCTGACTCAGCCTCCCAAGTAGCTGGGACTACAGGCACATGCCGCCACACCTGGCTAATTTTTTTTTTTTTTTTTTTGTATTTTAGTAGAGACAAGGTTTCACCATGTTGCCCAGGCTAGTCTTGAACTCCCGAGGTCAAGCAATCCACTTGCCTCAGCCTCCCAGAGTGCTAGGATTACAGGCGTGAGCCACCACGCCTGGCCTCACATTTTCAAAAATAATGACTTAGTGTGTTTTTTTGAGATGTCATATTTTTAAAATCTGGATTGCCACCTATTTTTAAGCTATCAGGAAATCTGGCATTCCTAGGCACTTCTTTCTACATGGCAGCTGCTGGCTGGAGCTGAATGGCAACTGTTCCCTTTCAAGGGGGCATTTCCTGTCCAGGTGGCCACTGTCCCCATCCAAGCAAGTCCTCTCATTTATATTACCTGCCAGGCCGCAGAGGCACTTGAGTTTGTAACCAGTGGATTAAATTCCATTTCTCCCTTAACTAGAAAATTCAGTTATCAAAAATATGCCTTCACCTAGGCATTCAGGTGAGTAATATAATTTTACTGGACTGGCTTAAAGAATAATAAGTGTGAGCTTTGGTTTTGCCGTGTTCATAAATGTGGCCACCATGGCAAACGATGTGGTTAAGCAACCCTCAACCTCGGGATGAATTACAAAGCCAGTTGAGAGATACGGTGTTTCTATTAGATGGTTTCAGCAATGCTACCCAACAGATTTGTTGAGAAAGAGCAATTATTTCTAGACTAATTAAAGGTCTTAATTAAAAAACTGTACATCAGCTGGGCACGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGCGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTCCAGTGAGCCGAGATTGCACCACTGCACTACAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAACTGTACATCTGCCTGGTGCCTCCTGTCAAGTTGCATTTTTATGCAAATTTTCCCTCTTCTATTTTGGTGGGTCTGAAG
Seq C2 exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897:ENST00000396052:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development