HsaEX0037078 @ hg38
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr16:20911183-20920214:+
Coord C1 exon
chr16:20911183-20911264
Coord A exon
chr16:20915556-20915714
Coord C2 exon
chr16:20920122-20920214
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGGTGGGTCTGAAGATG
3' ss Score
2.52
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGAAGTAGTATTTGAAGCTTTTCATCAGTTGGCTCATTCTTTACTCAAGAATAAACCTCAAGAAACGTCATCAGGGTCAGA
Seq A exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
Seq C2 exon
CTCACGGACACAGACCTAATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTGCATTACAAGATTCCTTACCCAAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897-'18-20,'18-17,22-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTGAAGCTTTTCATCAGTTGGC
R:
TTGGGTAAGGAATCTTGTAATGCAGT
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development