RnoEX0051615 @ rn6
Exon Skipping
Gene
ENSRNOG00000024530 | Lyrm1
Description
LYR motif containing 1 [Source:RGD Symbol;Acc:1563498]
Coordinates
chr1:189666301-189683312:+
Coord C1 exon
chr1:189666301-189666401
Coord A exon
chr1:189679087-189679277
Coord C2 exon
chr1:189683220-189683312
Length
191 bp
Sequences
Splice sites
3' ss Seq
CAAACTGCATCTTTATGTAGGTC
3' ss Score
6.69
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATAGAGCCCGGTGTGGCGAAGGCTCGGCAGAGCTCCTGGCACCGCCTCTTCCCAGCCGACTCCTGTGGGTGGGGGAAGGCAGGAGTGACGCTGAGTGAGT
Seq A exon
GTCTTCCTCCCCTTACTCTGGTGGGTCTGAAGATGACAGCAGCAAGCCGACAAGAAGTCCTCGGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
Seq C2 exon
CTCACAGACCCAGACTTAATTAAACAGTGTATAGACGAATGTACAGCCAGGATTGAGATTGGACTGCATTACCAGATTCCTTATCCCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024530-'7-4,'7-2,22-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGAGCCCGGTGTGGCG
R:
CGGTCTGGGATAAGGAATCTGG
Band lengths:
194-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]