RnoALTD0017184-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024530 | Lyrm1
Description
LYR motif containing 1 [Source:RGD Symbol;Acc:1563498]
Coordinates
chr1:189665802-189679277:+
Coord C1 exon
chr1:189665802-189666040
Coord A exon
chr1:189666041-189666401
Coord C2 exon
chr1:189679087-189679277
Length
361 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
CAAACTGCATCTTTATGTAGGTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCTCCCTACCCCCGCCGCCGCCGCCTTTTCTGCCACCGCGGCCGCCGCCTCCTCCTCATCTGCAGCCCACCGGCGGCGGCCGCCCCGAAGCCCCGCCCCCTCCATTGCCTCCTGCATCATCACTTCCGGTAACCCCGCCGGCCGGTGGCTCAAGGAGGGAGAGAATGGGAGAGGGGCGGGGACAGGAACGAGGAAGGTGACGCCACGACGTACGCGGGGACGTCCGAAGCCGTCTCCAA
Seq A exon
GTAAGGGCAAGGCGGGGACGGGTGGAGGGTGGGCTAGGACTGGGCCAGGCCATCTTCTGACTAGAAATGGGGGAAGGAGTTAAAGAGAGGGTAAAACGGAAAGCTGGAGGAGAGGGAGGTTAGCTCAGTTGTTGAGTGCGGCGGGGAGTCGGCTAAATCTGAAAGTTTCAGGAGGTTTGAGACGACCTCTGACCTGGGCCTCATGCTGCCACAGCTGTCCGCCCGGTGGTTTGGCCCGGCCTAGCCTGCGGGACCTGCTCGATAGAGCCCGGTGTGGCGAAGGCTCGGCAGAGCTCCTGGCACCGCCTCTTCCCAGCCGACTCCTGTGGGTGGGGGAAGGCAGGAGTGACGCTGAGTGAGT
Seq C2 exon
GTCTTCCTCCCCTTACTCTGGTGGGTCTGAAGATGACAGCAGCAAGCCGACAAGAAGTCCTCGGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024530-3-2,4-2,6-2,7-2-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTTCTGCCACCGCGG
R:
GTCTTCCATCTGCCCTGATGC
Band lengths:
344-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]