GgaEX1034505 @ galGal4
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
LYR motif containing 1 [Source:RefSeq peptide;Acc:NP_001155848]
Coordinates
chr14:14971825-14975089:+
Coord C1 exon
chr14:14971825-14971925
Coord A exon
chr14:14972896-14973054
Coord C2 exon
chr14:14974997-14975089
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTTGGTTTGTTTCAGATG
3' ss Score
9.41
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGAGGGCCTGCTCTTCCCAGAGGACAGCAGTGACCCTGCTCCTAACTGTTCTGGTCTGATGTCAGGGTACATTCAGCAACTGGAGCTCCAGGTTGGCAA
Seq A exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
Seq C2 exon
GTGATGGATCCAAAGCTGATTAAGCAGTGCATAGACGAATGTGAGGCAAGAATACAAATTGGACTTCACTACAACATCCCCTACCCAAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'4-5,'4-4,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGGCCTGCTCTTCC
R:
AGGTCTTGGGTAGGGGATGTT
Band lengths:
194-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]