GgaEX1034505 @ galGal3
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
NA
Coordinates
chr14:15687079-15690966:+
Coord C1 exon
chr14:15687079-15687161
Coord A exon
chr14:15688773-15688931
Coord C2 exon
chr14:15690874-15690966
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTTGGTTTGTTTCAGATG
3' ss Score
9.41
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AATTGGAGCTGTAGAGTGAATAAAGTGAAGCGTTTGTTCCAAAGTGATTGGCGAGCTGGGGCTGCCTCTCTGTTCTATCACAG
Seq A exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
Seq C2 exon
GTGATGGATCCAAAGCTGATTAAGCAGTGCATAGACGAATGTGAGGCAAGAATACAAATTGGACTTCACTACAACATCCCCTACCCAAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'5-9,'5-8,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTAGAGTGAATAAAGTGAAGCG
R:
AGGTCTTGGGTAGGGGATGTT
Band lengths:
170-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]