HsaEX0037078 @ hg19
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:25074]
Coordinates
chr16:20911620-20931536:+
Coord C1 exon
chr16:20911620-20912211
Coord A exon
chr16:20926878-20927036
Coord C2 exon
chr16:20931444-20931536
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGGTGGGTCTGAAGATG
3' ss Score
2.52
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CCGCCCCCTCCATCGCCTCCTGCATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAACGAGTGGAAGATTGCGTCACGACGCACATAAAGACGTACGAAGCCGTCGCCAAGTAAGGGCAAAGACCTAGCAACCCGGAGGGAGCTGGGCTGGACCATTTTTTTTTCTTGTTTTACGGGAATGGAGCGGGGAGGATAATGAAAGCGTAAAGGAAAAATAGGGGGAGGAGGAGCTCAGCTTATTGTTGGATGCGGCGGGAGATGGGTAGAGTCAGTCAGTCGAGACTCCCCCAGACCTGGAACTGGTGCTCCCACAGAGGTGGGCCCGGTGGTTTGGTCCGGCCTGGCCTACTGGACCAGCCTGTGCTCGGTCGGCCACGGCTCTGCTGGGCTCCTGGCGCCGCCTCCTCCCAGCCCGCCGCGGGCTGCGCGCTTCTGTGGGTGGGGGAAGGCAGGACTGACGCAGA
Seq A exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
Seq C2 exon
CTCACGGACACAGACCTAATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTGCATTACAAGATTCCTTACCCAAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897_MULTIEX1-4/5=1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGTCAGTCGAGACTCCC
R:
TCAATCCTGGCTGTGCATTCA
Band lengths:
254-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)