HsaEX0037076 @ hg19
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:25074]
Coordinates
chr16:20911620-20927036:+
Coord C1 exon
chr16:20911620-20912211
Coord A exon
chr16:20913808-20914039
Coord C2 exon
chr16:20926878-20927036
Length
232 bp
Sequences
Splice sites
3' ss Seq
CTTGGGTTCTTACCATTTAGAGA
3' ss Score
6.12
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCGCCCCCTCCATCGCCTCCTGCATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAACGAGTGGAAGATTGCGTCACGACGCACATAAAGACGTACGAAGCCGTCGCCAAGTAAGGGCAAAGACCTAGCAACCCGGAGGGAGCTGGGCTGGACCATTTTTTTTTCTTGTTTTACGGGAATGGAGCGGGGAGGATAATGAAAGCGTAAAGGAAAAATAGGGGGAGGAGGAGCTCAGCTTATTGTTGGATGCGGCGGGAGATGGGTAGAGTCAGTCAGTCGAGACTCCCCCAGACCTGGAACTGGTGCTCCCACAGAGGTGGGCCCGGTGGTTTGGTCCGGCCTGGCCTACTGGACCAGCCTGTGCTCGGTCGGCCACGGCTCTGCTGGGCTCCTGGCGCCGCCTCCTCCCAGCCCGCCGCGGGCTGCGCGCTTCTGTGGGTGGGGGAAGGCAGGACTGACGCAGA
Seq A exon
AGAGTACCCAGAGAAGGAGAAGCCAGCAAAGGAGACGACACAGACAAGACCTCAGAGATCAAAGGAAGAGGCCCCTTAATATCCTGGAATAATGGGACCCATCCCCGTAATCAGTGAATCTCATCCACCCGCTTGCCAGCTTCTACCCGCAGCAAGTAGAAGCTAAGTCCTGGCTCAAATCTCTTCCCTCCCTCCCTCTCCCAGCTGTCAGTGCTTTTGGACTTGTGCTCAG
Seq C2 exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897_MULTIEX1-2/5=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.008
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAGGAGCTCAGCTTAT
R:
AAGCCTGAAAATGCTGCGGTA
Band lengths:
302-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)