HsaEX0037075 @ hg19
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:25074]
Coordinates
chr16:20910922-20927036:+
Coord C1 exon
chr16:20910922-20911326
Coord A exon
chr16:20911620-20912211
Coord C2 exon
chr16:20926878-20927036
Length
592 bp
Sequences
Splice sites
3' ss Seq
ATCCCCGCTCGCGTTTCCAGGCT
3' ss Score
8.89
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGGGGAGGATGAGGGGTGAGAAGTGCGGGGGGTGTGGTGGAGGAACAAACAATACATTTGTCACCCCGTCCCACTTCCTATAGAGGATACAGGCAAAGCCTCCAGCCTCATTACCTCGGACACAGATGGTTATCGTTTATAGCAAAGGTGCACAAAAAGGCCTTCAGGTCTGAGCCCCTTAATTCCAGGGCTGTTAATGATTAAAGAGAACGATGGGGGTGGGGAGGGAAATGAGGGCGGAGGGAGCTGGGAGATTCACCCACCACCTCCCCCTAGGGCTCCTACCTCACAGCGCTCACCCAGGACAGAGGACCAGAGTCTGCACCCCCTCCAGGGCAGCTCCAACCCCATATCCCCAGGCCCTGGGTTGAGGGGTGCTGGCGGTGGGGAGGCAGGGACAGTAG
Seq A exon
GCTCCCTACCCCCGCCGCCGCCGCCTCTTCTTCCACCACTGCCACCGCCTCCTCTTCATCTGCGGCCCACCGGCGGCGGCCGCCCCGAAGCCCCGCCCCCTCCATCGCCTCCTGCATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAACGAGTGGAAGATTGCGTCACGACGCACATAAAGACGTACGAAGCCGTCGCCAAGTAAGGGCAAAGACCTAGCAACCCGGAGGGAGCTGGGCTGGACCATTTTTTTTTCTTGTTTTACGGGAATGGAGCGGGGAGGATAATGAAAGCGTAAAGGAAAAATAGGGGGAGGAGGAGCTCAGCTTATTGTTGGATGCGGCGGGAGATGGGTAGAGTCAGTCAGTCGAGACTCCCCCAGACCTGGAACTGGTGCTCCCACAGAGGTGGGCCCGGTGGTTTGGTCCGGCCTGGCCTACTGGACCAGCCTGTGCTCGGTCGGCCACGGCTCTGCTGGGCTCCTGGCGCCGCCTCCTCCCAGCCCGCCGCGGGCTGCGCGCTTCTGTGGGTGGGGGAAGGCAGGACTGACGCAGA
Seq C2 exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897_MULTIEX1-1/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.008
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCATTACCTCGGACACA
R:
AAGCCTGAAAATGCTGCGGTA
Band lengths:
358-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)