HsaEX0018787 @ hg19
Exon Skipping
Gene
ENSG00000188215 | DCUN1D3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:28734]
Coordinates
chr16:20873430-20911706:-
Coord C1 exon
chr16:20911526-20911706
Coord A exon
chr16:20907630-20907703
Coord C2 exon
chr16:20873430-20873965
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTTACACTTTGCAGGCT
3' ss Score
7.72
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CGGGGCGGCCGCCGCCGGTGGGCCGCAGATGAAGAGGAGGCGGTGGCAGTGGTGGAAGAAGAGGCGGCGGCGGCGGGGGTAGGGAGCCTGGAAACGCGAGCGGGGATGGTAGGTGGTTTGGACCCGCCGGGCCGCCGTCGTTTCCAGAAAGGGTTTGACTGGAGGAACCTCTGGAGCAGCT
Seq A exon
GCTTTTGGACAAACTCTTCTGAAAGGTGGGCAACCTAGAAAGCCAGTTGATGCCACTTGCTATTGGAGTTGTGG
Seq C2 exon
GTTGGCTGGCTCCTCTGGCTGATGGCATGTTGAGGTACATGGGCCAGCGGCAGCGAGGGCATCCAATCCAGAGGGGTCCACTCTAGAGGCCAGGCCACCAGCACCATGGGCCAGTGTGTCACCAAGTGTAAGAATCCCTCATCGACCCTGGGCAGCAAAAATGGAGACCGTGAGCCCAGCAACAAGTCACATAGCAGGAGGGGTGCAGGCCACCGTGAGGAGCAGGTACCACCCTGTGGCAAGCCAGGTGGAGATATCCTCGTCAACGGGACCAAGAAGGCCGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACGTCCTCGGGAGATGCTGGGAGGGAGTCCAAGTCCAATGCCGAGGAGTCTTCCTTGCAAAGATTGGAAGAACTGTTCAGGCGCTACAAGGATGAGCGGGAAGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTGTGTGTTGACCCCACAGAATTTCGAGTGCTGCTCTTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188215_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.507
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTTGACTGGAGGAACCT
R:
CCAGGGTCGATGAGGGATTCT
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)