HsaEX0037075 @ hg38
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr16:20899868-20915714:+
Coord C1 exon
chr16:20899868-20900004
Coord A exon
chr16:20900298-20900741
Coord C2 exon
chr16:20915556-20915714
Length
444 bp
Sequences
Splice sites
3' ss Seq
ATCCCCGCTCGCGTTTCCAGGCT
3' ss Score
8.89
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
TCCCCCTAGGGCTCCTACCTCACAGCGCTCACCCAGGACAGAGGACCAGAGTCTGCACCCCCTCCAGGGCAGCTCCAACCCCATATCCCCAGGCCCTGGGTTGAGGGGTGCTGGCGGTGGGGAGGCAGGGACAGTAG
Seq A exon
GCTCCCTACCCCCGCCGCCGCCGCCTCTTCTTCCACCACTGCCACCGCCTCCTCTTCATCTGCGGCCCACCGGCGGCGGCCGCCCCGAAGCCCCGCCCCCTCCATCGCCTCCTGCATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAACGAGTGGAAGATTGCGTCACGACGCACATAAAGACGTACGAAGCCGTCGCCAAGTAAGGGCAAAGACCTAGCAACCCGGAGGGAGCTGGGCTGGACCATTTTTTTTTCTTGTTTTACGGGAATGGAGCGGGGAGGATAATGAAAGCGTAAAGGAAAAATAGGGGGAGGAGGAGCTCAGCTTATTGTTGGATGCGGCGGGAGATGGGTAGAGTCAGTCAGTCGAGACTCCCCCAGACCTGGAACTGGTGCTCCCACAGAG
Seq C2 exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897_MULTIEX1-1/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTAGGGCTCCTACCTCA
R:
ATTTTTGTTTTTCCGGAACAGCGT
Band lengths:
294-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development