HsaINT1022299 @ hg38
Intron Retention
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr16:20902486-20911264:+
Coord C1 exon
chr16:20902486-20902717
Coord A exon
chr16:20902718-20911182
Coord C2 exon
chr16:20911183-20911264
Length
8465 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCTTTTAACCTTTGAATTAGGTG
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGAGTACCCAGAGAAGGAGAAGCCAGCAAAGGAGACGACACAGACAAGACCTCAGAGATCAAAGGAAGAGGCCCCTTAATATCCTGGAATAATGGGACCCATCCCCGTAATCAGTGAATCTCATCCACCCGCTTGCCAGCTTCTACCCGCAGCAAGTAGAAGCTAAGTCCTGGCTCAAATCTCTTCCCTCCCTCCCTCTCCCAGCTGTCAGTGCTTTTGGACTTGTGCTCAG
Seq A exon
GTAATTTGTGTCCGTTATAGAAAACCTGACTTTTTGGATAAATTGTCTGTTTATATGGCTGTCTCCCCCAGGTACTGTTTCTTATTTGTGTCTTCCTGGCTCCTGGTACAGAGCCTTGTCCATATGGTGGTTGTAGCTGGGCAGGAACACTGTGTTCATAAGGTATCAGCCATACAATCCAACAGCTTCTCACAAAAAGGGGCTTTTGTCCCTGCCACTGCTGCCAAGCCCACCACAATTACGATCAGTTCCACAATATAGTGTAAAGGGTATCAGAAGATGAATAAGAAGGCCTGGGTTTCAATCCTGGATCTGCCACTGACCAGCAGAGTGGCCATGGATAAAGCTCTTCTCTCTGAGCTGAAGGGTTGGCCTAGATTTGAAGTTGCATACTGACAAGACAGATATTGCCTGCAAACATATTGTTCAGCCCACACAGTGATTTAAATTCTTTTTTAAATTTACTTGCCAACATTTAAAAATTGGACATCAAAATCCAGACTTTGGGCTTCATTTGAAAAATCCGACAATCTGACAACACCAGCCTGAAGTTCCTAGAGGTTCCTACACAGCAACTGTCAGCCAGAGCTGAAGAGCTGTCTCCCGTCTATGTGGCTCATGCTCAGGGTTTGCCAAAAAGGCCTCTCCTCTCCTGCTACCTGGCTGACCCCTGTGGGCATTTGATTTGCAATTCTTGGTCTAGGGCTGTGCTATCCCTGTGTAGCCACTGACCACATGTGACTATTTAAATAAAAATTCAGTTCCTCCAACACAGTATGTTTCAAGTGCCAGTAGCTACCTGTGACAGGTGTGTGTCCTATTGGACAGAGCAGATAGAACCTTTCCTTCACAGAAAGTTATCTTGGTCAGCATTGGACTGGAGGAACTCGAGGGTACTATGTAGGCTAGTCATTCTCCGCATGTGAAACTCAAGGGACTTAGCCTACTGAGGAGCTCTGGTGCCTCTGCAGATGGGAAAGTTGCGCATTCAGTAGTTATTTGATGGTGGAGGAAGCTGTCCTGAAGGCCTGGACCCCTGCACAGAATGTGGTTATTTATCAGAGAGTTGGATCAAGGGTCAGGTGCTAGAAAGCCCCAACTGTATCTAGTGTGGCATGCAAAGCTCTTTGGTCAGTTTCCTAATCCAGTTCCTCAGAAAACTATAACAAAGCAAGAACTTAAGTCAGTGTCTTGTGTTCTCAGACTTTTCGATTTGATATGAAGGGTGAAAGATCCTGGCTGGGGAGTTATGAATGAATGAATGAATGAATGAATGAATGATCTTTAGCATTGGCCTTCAATTCCAGCCCCCCCACCACATCTCTTCCACTGCCTTCTACTACTAGTAACTGGTGACTGCTTTTTCACCACCTCTGACTGACCCGTACCTTTTCTTTGCCTGTTAAAATATGCTAATAAGGAAACATACTTCCATTTCTTTTGAATTGAGGGGCCCATAACTTTTCATTTAGAACTTCTATCCCTGATGGGAAAAATAGCTGTATATCTATTGGTTGTTATCTTGGTTACAGTAGCCTGATTGGAGTTCCCCTGTACAAATATAATCTTGTGTGCGCTCCGGTGCTGGTATGATATATTTAGAATGGGTGTGCTTGCCTCCTGTGATCTTGTTTGGGATAGACATTTTAGAAGTCTTTCAGACATTTTTTGTTTTGGCCCCGTGTTCTAAAAACTTCCCATATTACAGGGCCTAAACTAAATTATTTTCCCTTAGGTAAAATAAAAATGCCATCCACCCTCTCCTCCCTGCCCCCTATTGCTGACAGACCATATTCTTATCATTTTCTGTGTAAAAAGATGCTGTTTCATAAAATAGCTGCGGTATGATTAAGTATACCACACAAGCATATCCTGAAATTTGCAAAACAGTGTGTGGCATGTGAGGCATTACACTTCCCTTTTTGGATTCTAGTAACCAAAAACTGAATCTGAAACAGGAAATAAGTCTGTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATTGATAGGAGGATATGGGACCAGAAATGTATGGAGAACAATTTCACTTAAAGGTTATTGGATTGGGGTAAGAATATGGGTGTACACCAAAAAGGAGGGAGTATAACAGATCTAAGAGAAAAGTGCCCTGAGGGATAAACAAGGAGTAAGAGATAAAGGAAGAAAAATAGGAAGGGAAGCCTGGTCATGCCTTTGGTGTTGGCACCTGCATTATATTTCCAGTAAGAAGTATGCGCTGTGGTCTGAAGATAAGCGGTGCTTCCAACAGGGTTATTTACTCATACCAAAGAACAATAGTCCTTTGCTGTACAGGGATTATTAATGATCAGAGGGAAACAGCTTTAGGAAAATCCATTACTACCACAAAGCAATAAATTCACCAACAGGCCACACATTTCTCTCCTATTCAGACAAAGCTTAGCATAGATAAAAGAGACCTCGTTGTTCTTCCTCTGTTTCCTCCTATTCAGGTAACATTTGCCTTTGTTAACTCTCAGTGCTAAGTGATGTTACATGGATTATTTCATGAATAATCCTTACGACTCTGAAAGGGGTTCTGCTATTACCCCATTGTACATTCTAAGAAACCAAGTCTCAGGCAGTTAATAATTTGCCCAATGGGGTAAAGTCAAGATTCAAACCCAGCCTTGTCCGCCCAGAGCCCAAAATAAATGTTCATTTATTTTGTATTATATCTGCTATTCCTTACAAATGGGACAGACATTCCCTACTCTGCTATACAGGGCAAGAACATCTGGTTGCTCTGACATTAGCAAGAGCATTTCAATTCTGTAGAGGTTTTCCAAATGATAGTTTTAAGTCACAGTTTTCTAGATTGATTTTAACCCATGATCATTGAGTATAGTGGACCTTATTCCCCAAAAGGATTTTTTCAGGAAAAAAGTATCAGAACCCCATTCTTCTATGTTTGGTTCTAAACTTCATGGAAATATTATAAGGTATTTCAGTCCAGTGGACAAACCCTAACCAGCCTTAAGAAAACTTAAGAGTGAGGGTTACATCATAGCTGTGTCTCTTACGCTGTTCTGGATGAAACTGATGAGGATTCCTCCCCAAGTAACACTGAGTCTCCAGTTCTTTATCCTGACACACACTGCTCTTGAAAGCATCCTAGTAAGGGTTAATTAGTATTTAACCCTTCAATGCTCTGGGATCATCAGTTGGGAAGCTTGTCCAGATACCATCGTGTGTATCTCAGGATGAGAACATACGTTATCAATGACCATTCTGTGTGTGTAAATTTATTCTTCTAATACATATTTGTCATGTTCCAACTATGTGCCAGCCTAGGCATGTAATGTACAAGACAGTCCCAAATCTCCCCCTGCTCTCCCCACCTCCTACTCCCTGCAACACACACATGGTGGAAAAAGAAAGGTAAGTCATGCAAAATTATGATAGAGTAGGATGAACATTATGACAGGGGTATGCCAGAGGTGCCAGGAGTGCACATAGCCGGGACACTGACCCAGCCCCAGTGTGAAAAGGGCACCCGTCCAGAAGTGATGGAAGTCAAAAGGTGGAAGCAGCAAATAGGCAAAGAAAGGGTATTTCAGTTGTATGAAGTAGAGAGGCTTCCTATGGCAAAAAGAGGGACATTGCACATACAGAAGACCATGATCTCATTTGGGTGGAGTTTATGATTCCCCCTCCTTGCTAAAAAATCATAAAGTACTTGGGAGAGAAATTTGACTATACTACGGTCATGAGTTCTGATGAGGGAAAAAATTCCACCTAGGGGTAGGTCTTTCCTGAAATAAATGGAAAGGGGTGTTTAACTTCCTGGGGCTTGAAAATCAGGGTAAATTCCTCTTGCCTTTGTCCCATTTCTTATTTGTACTGCAACACATTTTCTTTAGAAGGCAAAGCCTCATGAGAGTCCAGCATTTGGAATTTGGACATTCCTGAGACCAGAGTCATACTTCTATAAATCTCAGCTGGGGAAAGGGAATTTTCATCTCTGCTCTTAAATTCCTAAGTGTTCATGCTGCAATGGTCTTTCCAAAGGCAGAGGAACTGTTCCAGAGGTGGGGTAAAAGGGCACAGTGGATGAGGCCCCTCATACCAGCAGATCTTTCCATAGTCCTCCTGTAGAAACACCAAGTGTCTGGGTATGCCTTGTACAGTAAGTTCTTGGAACCTCCCCAGACCCTCTCACTGCACTTTGGACAGTGAGTGGCAGAGTGGGTGGGTGTTTGGTGTTTGGTTTTTGTTTTTGTTTTTTAGACTGATCGCTGCCCATTATGAGTCCCCATTACTGACTCCAAAATAGAAAAGCTTGTGGTCAGTCAGGAAAATGATCATCCAGCTTTTTTGGCTCTTGACCCTGACTCCTGTCAACTAATTAGGGGCATTAGGCAAGATCTTGTTTCACCATCTGTACAAGTGTTGGAATTATAAGTAGTTATGATATACAGTAGTTTGATATACAGTGTATTTAAAAAGATATAAATCAGACCGTGTTACTCCAGCTTGCATAAAATCTACCAGTGTCTTTTGCGCTTAAGACCAGAAACAAAGTGCCTTTCCAAGGCCTACCCCCAACCTGTGCTGGATTCTGTGGACCTGTGGCCCCTTTCCCAAAGGCTCTTGTTGCATTCATGTTCATCTTTTTTATTTTCATTTTTTGAGATAGAGTCTGACTCTGTTGCCCAGGCTTGAGTGCAGTGGCGTGATCATAGCTCACTGCAGCCTTTATCACCTGGGCTCAAGGGATCCTCCCACCTCAGCCTCTGAAAGTGTTGGGCTTATAGGCATGAGCCACCATGCCTGGCTAATGTTTTTATTTTTCAATGGAGATGGGATCTCCCCGTGTTGCCCAGGCTGGTCTCAAACTCTTGGGTTCAAGCAATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCTGCCTCATGTTCATCTTTGAAGTCGATTCCCACGTCACATCCTTTGCTCCTGTTGTTCCCTCTACTTGCACCAGCTTCCCCTTACCTGGGTCCGTTATTAGGTTCCATCACACCATTCAGGACTCAGCTCAAATGTCACTGACCACCCAGAAAATAACCCCCACCTCTGGTCATTTGTATCTTATTACTCTTCAGAGCACATATGACTGTCTGAAATTCTTGTTCTTGTACATCATCTGCCTATGCCACTAGAATATAAGCTCAAGGAGGGTAGGGACCATGGCTGCTTATTTATCACTGTATCCCCAGAAACGGCAGGTGTCTGGCACATGGTGGACCTTCAATAAATGTTGAGTGAGTGGATGGATGGATGGATCCTTGGAAGGGAAGAGTAAGGCCTACCAGGTAGTAGCACTGTAGTGAGCCCCTGCACTGGTGGCTTTTATGTTGGCTCCATTGGAGTCAGAGGGGACAGGGTTGCCACGGGGAATGGAAGAGCAAAGCGGTGCAGCCATGTGCCCAGCCTGCTTAGAGCATGCTGGTGTGTAACATAATTAAAAAGGGCGGTTGCAGGTTAGGAGCAGGGGCAGGTGGCAAATGGGGAAGGCTATTGGAATTCACATCAATGTGCAAAAAAATTGCTTCCTTTGCTCTTTGTATAGAAAGGGACTAGAATTATTTAGTTCCCTTTGTCACAACTAGCTAAGCTCTTTAAAGCAATCAACAGACATTCAACATTTATTGAGATTGAACAGTGTATTTCGTGATTAAAAGCATGGGCTCTGACTTCAGACCAGCTGAGTTTGAATCCTAGCCCTGCCTATTGTTAGCTGTGTGACCTTGGACAAGTTACTTAGTCTCTGCATCAGGTTCCTCCTTTGTAAAATGGGGATAATGGTAGTATCTGCATATATAGAGTACCTAGCAAATTATCTGGCACACAGTAAATGCAAAGCAAATGTAACTTTTAATATTTTTCTTACTGTAATGAACAAGATACAATCCCTGCCCTTCAGGAATTCAGACTCAGAGAAGAAAAAACAGAGTGAAAGAAATGCAGAACTATCTGCTGGCCATGATAGAAGCAAGGAAAAGGTTGCTTTGGAAAAGCTTAATAGCAAGTAGGTGTCTGTTTGATGGTGTGGGGTGGCTAGCAGAAAGGAGACATTGTAGGCAGAGGAAGACTCAGCCAAGACAGACAGAAGTATGACATGGCAAGGCACCTTAGAGCAGTAGCTCCCAAACTTCAGAGTCCACATCACAGTTTTTGCTGTTTACCTATATTTTAAACTAGCTTAAAAAGTTTTCTAATTCATTTCTTTAAAGGAAGCTGTATATCACATAAAATCTAAATCACTCAAAATTATGGGTTTGATGGGCTTTTCTAATATACAGTTTGTATTGTATATCTAAGATCACCTCCCCAACCAATCTTTGGGACACTTGGCATTAGGGGACACATCTCTTAACTATGACCAGAGGCCACAACACACTGGCAGCAACATCTGTCAGCCTTTTCTTAGTGGCACAGGCCTGCACATCACAGAGGCTTGGAAATGATCCTCACCTCCACACATGTATATCCCTGTGTTATAACAGGGCGTGATTTTTAAGAAAAGAGACCAGCTTCTAGTCCCATTTCTTTCCAGGCACACCTCATATCTTCTGTCTTTCTTCATTCTGGGATTTGGGGGTTAGGGAGATGAAAAGGAGTAAAGAATTGGAAGAAATGTCGGTCTCAGAATAAAGATTATAGAAGGTTAACTTTTAAAAATCTACATGGATAGACTTCGTGACCAGCTGAGACCGCAGTTGAATTGTGGTCCTCTAAACTACTGAATATTCCTGATGTATTGCTGGTAAGAAAATCCCAGCAGACCCCATTGTATCAGATCAACCCCTGATGTAGTGAAGAAGGAAAAGGGCTTCCTTAGTCTTGCATTAATTGTGAGAGATAATTGATAGTTTTAGAGCAATAAATGTTGGTTTCAAGCCATTAAATCCATATTCGGGAAAAGCTGATTTTTCTAAATAAGTTGCTTTCTAGGAACAAAGACAAAAATATAAAAAGGAAAAGAGCTTTTTAAACTTTTTAAAAAATATATGGCTGATTCTGTTTCTAGAATCACAAACTTTCTATAGCACAGGATACTCTCAATTATTCAGCAAACATTTATTGAATACTGATTATATACCTTTCTAGGTGCTGAGAATTCAGCAGTAAAGAAGATGAATGTGATCATTGTCCCCCATAAAAATGAGAGTTTACTGGGGGAAGACTTTAACAAACCATTACTTAAGTGAGGAGTGCTATACAAACAAGAATATTAGGACCTGTGAGAAGGTTCAACAGAGAGCCCCAACCCAATGGGTGTGAGGGAAGCAGGAAGATTTTCTGAGACATCCATATTTTCACTGGGAACGGCAGGATGGATAGGGTTGGTCAGGTAAAAGGGAGGGGTTCAGGGGAAAGCCTTCTAGAAAGAGAAAACTGCATGGATATGTGCCCCTAAGGCAAGAAAGAACATGGTTCCCTCAAAGACCTGAAACAAACCCAGTAAGAAAAGAACAAAAGAAACATTTTTCTTTTCTTGCCTTTTCTCTCAAGACTTGGAAGGAAATGGTAGGCTAGATTTAATAGGACACAATGGTGAATACAGCTTTAGACCCTTCTCTCAGGAAATCTTTGAAACTTGGGTTTTCTGGGTCACCTGATGTTGCAGAGTGAGACATCACATAAATCCCTTTCAGGATTAGTTTTCAAAACACTTAAACGTTAATTAAAGTGTTTTGAAAATAGTCCTATTAAGTACCAATTGTTAGCACTGCTCATTACCTTGAGGGTATTAACCTAATTGCAGGGCTTGTGTATCAGATTATGGTATATGATCAGTTAGAGTTTGAAACAGTGATTCTTAGAGTCATAGAAGGAAACTAATTAAAGTTAGATTTTTAGAGAAGGTTGCTTTAGCCAGTTGTTGTGGCGCACGCCTGAGGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGGCTCACTCGAGCCTGGGAGGTCAAAGCTGCAGTGAGCCATGATCATGCCACTGTACTCCAGCCTGGGTGACAGAGCGAGACCCTGCCTCTAAAAAAAAAAACAACAACAACAAAAAACCTTGCTGCTGATTGAATATGCCTGACCTTGGTCACTTTTCTCAAGTGTCTTGCAGTCAAGGAAGTTCCGTCTGTTAATGACAGGGAAGTGAAGCAATCATTAAGAGATGTTAGTTACAGACTCCCTGTACCTCACAGGAACTGACTCATGTATTTTCATATGAAACCATGGAGTTTTAGGGAGAGCCAGAAACTCAGAAACCTGTTTCCTTACCAGGAAAAATGTCATCATCTCATCTGGGTTTTTATTACAATAAGCCACAAAGCATGATGTTCTCTCTTGGTTTTTATGAATTCCTTGTAAGCATTTTTTTCTGTGCAGCCTCATAGACTCAGAATTGGTATTGAATATAACTTTGGTCCTTTTAACCTTTGAATTAG
Seq C2 exon
GTGAAGTAGTATTTGAAGCTTTTCATCAGTTGGCTCATTCTTTACTCAAGAATAAACCTCAAGAAACGTCATCAGGGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897:ENST00000396052:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains