HsaALTD1051104-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20896308-20900407:-
Coord C1 exon
chr16:20900307-20900407
Coord A exon
chr16:20900204-20900306
Coord C2 exon
chr16:20896308-20896381
Length
103 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TTATTTCTTACACTTTGCAGGCT
3' ss Score
7.72
Exon sequences
Seq C1 exon
AGGCGATGGAGGGGGCGGGGCTTCGGGGCGGCCGCCGCCGGTGGGCCGCAGATGAAGAGGAGGCGGTGGCAGTGGTGGAAGAAGAGGCGGCGGCGGCGGGG
Seq A exon
GTAGGGAGCCTGGAAACGCGAGCGGGGATGGTAGGTGGTTTGGACCCGCCGGGCCGCCGTCGTTTCCAGAAAGGGTTTGACTGGAGGAACCTCTGGAGCAGCT
Seq C2 exon
GCTTTTGGACAAACTCTTCTGAAAGGTGGGCAACCTAGAAAGCCAGTTGATGCCACTTGCTATTGGAGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-1-0,2-0,3-0,4-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCGCAGATGAAGAG
R:
CACAACTCCAATAGCAAGTGGC
Band lengths:
134-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains