MmuEX0027394 @ mm10
Exon Skipping
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:119895861-119914265:+
Coord C1 exon
chr7:119895861-119895890
Coord A exon
chr7:119909804-119909962
Coord C2 exon
chr7:119914173-119914265
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTACTCTGGTGGGTCTAAAGATG
3' ss Score
3.3
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTACGCGAGGACGTCCGAAGCCGTCTCCAA
Seq A exon
ATGACAGCAGCAACCCGACAAGAAGTCCTCTGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCGAAGAAAAACAGTACATACTAAAGGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
Seq C2 exon
CTCACAGACCCAGAGCTGATTAAACAATGCATAGTTGAATGCACGGCCCGGATTGAGATTGGACTGCATTACCAGATCCCTTATCCACGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCGAGGACGTCCGAAG
R:
AGGGCGTGGATAAGGGATCTG
Band lengths:
122-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types