MmuEX0027393 @ mm10
Exon Skipping
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:119895861-119909962:+
Coord C1 exon
chr7:119895861-119895890
Coord A exon
chr7:119900111-119900308
Coord C2 exon
chr7:119909804-119909962
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTCCTCCTTTTCAGGTA
3' ss Score
12.57
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTACGCGAGGACGTCCGAAGCCGTCTCCAA
Seq A exon
GTAAAGTACACCTTTACTTCCTAGTGCTCAGTATTTTAATGAAATATCTCATGAATAATCCTTACAACTCTGAAAACTGTTCTGTGGCTGCATATTACCTTTTAAGAACCTGAATTAGGAGTGAAGCTTCATGGTACAAACCTGTAATCCCAGCTGCTCCTGAGGATCAAAAGTTCAAGGCTCTTCTTGGATAATAGA
Seq C2 exon
ATGACAGCAGCAACCCGACAAGAAGTCCTCTGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCGAAGAAAAACAGTACATACTAAAGGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922_MULTIEX1-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCGAGGACGTCCGAAG
R:
TGGAACAGTGTTCTGGCTTCC
Band lengths:
175-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types