MmuEX0027393 @ mm9
Exon Skipping
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:127039375-127053476:+
Coord C1 exon
chr7:127039375-127039404
Coord A exon
chr7:127043625-127043822
Coord C2 exon
chr7:127053318-127053476
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTCCTCCTTTTCAGGTA
3' ss Score
12.57
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTACGCGAGGACGTCCGAAGCCGTCTCCAA
Seq A exon
GTAAAGTACACCTTTACTTCCTAGTGCTCAGTATTTTAATGAAATATCTCATGAATAATCCTTACAACTCTGAAAACTGTTCTGTGGCTGCATATTACCTTTTAAGAACCTGAATTAGGAGTGAAGCTTCATGGTACAAACCTGTAATCCCAGCTGCTCCTGAGGATCAAAAGTTCAAGGCTCTTCTTGGATAATAGA
Seq C2 exon
ATGACAGCAGCAACCCGACAAGAAGTCCTCTGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCGAAGAAAAACAGTACATACTAAAGGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCGAGGACGTCCGAAG
R:
TGGAACAGTGTTCTGGCTTCC
Band lengths:
175-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types