BtaEX0020946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018559 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr25:18797874-18826300:+
Coord C1 exon
chr25:18797874-18797959
Coord A exon
chr25:18802378-18802531
Coord C2 exon
chr25:18826142-18826300
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATTTCCTATTTCAGGTA
3' ss Score
12.24
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
TCAGCTGCGCTCCCGGCGCCGCCTCCTCCCAGCCTGCCGGAGGCTGAGGTGCTTCTGTGGGTGGGGGAAGGCTGGACTGACGCAGA
Seq A exon
GTAACATTTTGCCTTTGTTAACTCCCAATGCTAAGTGATTTACGTGGATAATTATGAACAATCCTTACAGCAGCTCTTTGAAGAAGGTTCTATTGTTACCCCATTTTAAGAAATTGAGGCTCTGGAAGATTAATATCTTGCCTGATGTGGTGAG
Seq C2 exon
ATGACAATGGCAACACGACAAGAAGTTCTTGGCCTCTACCGCAGAATTTTCAGGCTTGCGAAGAAATGGCAGGCTGCATCAGGGCAGATGGAAGACACCATTAAAGAAAAACAGTACATATTAAATGAAGCCAGAACGCTGTTCCAAAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018559_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGAGGTGCTTCTGTG
R:
TTTGGAACAGCGTTCTGGCTT
Band lengths:
195-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development