MmuALTA0010382-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:119900111-119909962:+
Coord C1 exon
chr7:119900111-119900308
Coord A exon
chr7:119909671-119909803
Coord C2 exon
chr7:119909804-119909962
Length
133 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TGTTTCTACTCTGCCCACAGATC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GTAAAGTACACCTTTACTTCCTAGTGCTCAGTATTTTAATGAAATATCTCATGAATAATCCTTACAACTCTGAAAACTGTTCTGTGGCTGCATATTACCTTTTAAGAACCTGAATTAGGAGTGAAGCTTCATGGTACAAACCTGTAATCCCAGCTGCTCCTGAGGATCAAAAGTTCAAGGCTCTTCTTGGATAATAGA
Seq A exon
ATCTGTTGAACAGGAGCAATCATTTCTAGACTAATTGAAAATCTTGATTCAAAAACTGTACATCTGCCTATCTGTCTACTGTCAAACTGCATTTTTAGTAAATTTTCTTCCTCTTACTCTGGTGGGTCTAAAG
Seq C2 exon
ATGACAGCAGCAACCCGACAAGAAGTCCTCTGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCGAAGAAAAACAGTACATACTAAAGGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922-9-13,9-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTTTACTTCCTAGTGCTCA
R:
GCAAGCCTGAAAATGCTTCGG
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types