GgaALTA0001039-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002273 | LYRM1
Description
NA
Coordinates
chr14:15687079-15688931:+
Coord C1 exon
chr14:15687079-15687161
Coord A exon
chr14:15688672-15688772
Coord C2 exon
chr14:15688773-15688931
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TATTTCAATTCTTTCTTTAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
AATTGGAGCTGTAGAGTGAATAAAGTGAAGCGTTTGTTCCAAAGTGATTGGCGAGCTGGGGCTGCCTCTCTGTTCTATCACAG
Seq A exon
GTGGTGGAAATACTCTTACGCCAATTGAATTGTGTGGAAAAACAGTACACGTGGTGGTCTTCCACACGCACTGGGGCTTTTGTGGTGTTGGTTTGTTTCAG
Seq C2 exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGAGCTGTAGAGTGAATAAAGT
R:
TTTTTCGGAACAATGTTTTGGCT
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]