MmuEX0027395 @ mm10
Exon Skipping
Gene
ENSMUSG00000030922 | Lyrm1
Description
LYR motif containing 1 [Source:MGI Symbol;Acc:MGI:1921169]
Coordinates
chr7:119909804-119916285:+
Coord C1 exon
chr7:119909804-119909962
Coord A exon
chr7:119914173-119914265
Coord C2 exon
chr7:119916141-119916285
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTTATTTCCCCTTAACCAGCTC
3' ss Score
5.27
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGACAGCAGCAACCCGACAAGAAGTCCTCTGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCGAAGAAAAACAGTACATACTAAAGGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
Seq A exon
CTCACAGACCCAGAGCTGATTAAACAATGCATAGTTGAATGCACGGCCCGGATTGAGATTGGACTGCATTACCAGATCCCTTATCCACGCCCT
Seq C2 exon
ATCCATCTGCCTCCAATGGGTCTCACCGCACGACGAGGTCGGGGACTTCAAACCCAGGAAAAACTGAGAAAACTTTCCAAACCAGTGTATCTGAAGTCTCATGATGAAGTTTCCTAACAAAGAGGACACTTTACTTTTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030922_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0534710=Complex1_LYR=PD(28.4=61.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCGACAAGAAGTCCTC
R:
TGAGACCCATTGGAGGCAGAT
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types