HsaEX0037079 @ hg38
Exon Skipping
Gene
ENSG00000102897 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr16:20915556-20925006:+
Coord C1 exon
chr16:20915556-20915714
Coord A exon
chr16:20920122-20920214
Coord C2 exon
chr16:20924000-20925006
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCCCTTTTAATAGCTC
3' ss Score
9.01
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGAGGAAATGGCAGGCGACATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACGCTGTTCCGGAAAAACAAAAAT
Seq A exon
CTCACGGACACAGACCTAATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTGCATTACAAGATTCCTTACCCAAGGCCA
Seq C2 exon
ATTCATCTGCCTCCAATGGGCCTTACCCCACTCCGAGGCCGGGGACTTCGAAGCCAAGAGAAACTGAGGAAACTTTCCAAACCAGTATATCTCAGATCTCATGATGAAGTTTCCTAATCTAGAGGAAAGTTTATTTCTGCAAATGATGAGCCAACTAGTTATTGAATGTAAACCAGATGGCAAAACACTTCTTGATTAGGGGCAAAAATTCAAATGTCTTCTTAAAACCTCCACAATTGATTCTCCCCCTGTGATGTAAACTTAGATATCCCTAGAGTTTCTCAGCATCTTTCTTCCTGAGTGGATGGCATTATCCCTAGAGGTCATGGACCTTACATCCTCACTGCAGTCACCTTTGGAAACAAGACCGAGGCCTGTAGAAGGAAAGCGGAAGGATGTAAGAGCTGTTCATGGGAATTCCATTCACCACACATGCCAGCTGATGCAAAGAAATTTGCCAGTCACTGGAAGTTACTGTGGCTACTATAAAACTATGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102897_MULTIEX1-5/5=4-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0534710=Complex1_LYR=PD(28.4=61.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCAACACGACAAGAAGT
R:
GCCCATTGGAGGCAGATGAAT
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development