RnoEX0051616 @ rn6
Exon Skipping
Gene
ENSRNOG00000024530 | Lyrm1
Description
LYR motif containing 1 [Source:RGD Symbol;Acc:1563498]
Coordinates
chr1:189679087-189685842:+
Coord C1 exon
chr1:189679087-189679277
Coord A exon
chr1:189683220-189683312
Coord C2 exon
chr1:189684950-189685842
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTTATTTCCTCTTAAATAGCTC
3' ss Score
6.36
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GTCTTCCTCCCCTTACTCTGGTGGGTCTGAAGATGACAGCAGCAAGCCGACAAGAAGTCCTCGGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
Seq A exon
CTCACAGACCCAGACTTAATTAAACAGTGTATAGACGAATGTACAGCCAGGATTGAGATTGGACTGCATTACCAGATTCCTTATCCCAGACCG
Seq C2 exon
ATCCATCTACCCCCAATGGGTCTCACCCCACGACGAGGCCGGGGACTTCAAACCCAGGAGAAACTAAGAAAATTTTCCAAACCACTGTATCTGAAGTCTCATGATGAAGTTTCCTAACAAAGAAGACACTTTACTTTTTAGAATGGTGAGCCAACTCGGTTTTGAATATAAACAAGGCAATATACCCTCCTTGATTAGAAGCAAAATACTTTTCAGACCTCCAAAATTGGTCTTCACCTATGACATGTGGCTGCAGGCATCCCTAGGGTTTTTCGGGGTCTTGCTGCTGCTTGAGCTGATGGACTTCACATCTTCCCTGATGTCATCCTTGGGAGCTGTCTGAGGCCTGTGGGGAAGACTGAAGGCAATTCCTGGGCGGCCTTTCAGCACACATCTGATGCAGAGGGATTAGCTAGTTGCCGCAAGTTCACATGGCTCCAAAACTGCTCTGCTCCCAAAATACTTTATAGAGTTTTTTTCCACAAGTTATTTTCATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024530_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.395
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0534710=Complex1_LYR=PD(28.4=61.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGCTTGCACGGAAATGG
R:
TCTCCTGGGTTTGAAGTCCCC
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]