GgaEX1034506 @ galGal3
Exon Skipping
Gene
ENSGALG00000002273 | LYRM1
Description
NA
Coordinates
chr14:15688773-15692935:+
Coord C1 exon
chr14:15688773-15688931
Coord A exon
chr14:15690874-15690966
Coord C2 exon
chr14:15692511-15692935
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTAACTCTCCGTTATCTTAGGTG
3' ss Score
7.84
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGACAGCAGTCATGCGACAAGAAGTGCTGGGCCTCTACCGCAAGATATTCCGGATAGCCAAAAAATGGCAGTCAGCATCAGGACAGGCGGAAGAAACTACTGCAGAGAGGGAGTACATCATAAAGGAAGCCAAAACATTGTTCCGAAAAAATAAAGAT
Seq A exon
GTGATGGATCCAAAGCTGATTAAGCAGTGCATAGACGAATGTGAGGCAAGAATACAAATTGGACTTCACTACAACATCCCCTACCCAAGACCT
Seq C2 exon
ATCCATCTGCCTCCCATGGGTCTTACCCAGAAACAAGGCCGTACATTTCGACACCAGGAAAAGCTGAGGAAGATTTCTAAGCCAATATACCTGAAATCCCATGACGAAATTTCATAACCCATCATTTCAGCTGTGATGTGTTGGGACTGCAGTGCAGGTGGTTTGCGTGCACAGCTGTGAATGAAGCTGTTCTGGTCACTTGCTTCCACATCACCTGAGGCCTCACCAGAAAGCTATAGATGTGACGCACATGATGGCCAGGGCTGGGCAGGTATTTGCTACAGCTCAGCCACTGACTGATCAATAAAAGTGGCACTTGGCAAGGAGTGAGGTGTGATGCTTTGACATCAGGACAAATTACAACAGTTTTTCAAATCCTCTTAAACTATAAAAGGGTTCTTCCATGGTTTGAGAATTATATATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002273-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0534710=Complex1_LYR=PD(28.4=61.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGTGCTGGGCCTCTA
R:
GTAAGACCCATGGGAGGCAGA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]