BtaEX6109004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018559 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr25:18826142-18835009:+
Coord C1 exon
chr25:18826142-18826300
Coord A exon
chr25:18830345-18830437
Coord C2 exon
chr25:18834893-18835009
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCCCTTTTAATAGCTC
3' ss Score
9.09
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGACAATGGCAACACGACAAGAAGTTCTTGGCCTCTACCGCAGAATTTTCAGGCTTGCGAAGAAATGGCAGGCTGCATCAGGGCAGATGGAAGACACCATTAAAGAAAAACAGTACATATTAAATGAAGCCAGAACGCTGTTCCAAAAAAACAAAAAT
Seq A exon
CTCACAGACACAGACCTGATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTTCATTACCAGATTCCTTATCCAAGGCCA
Seq C2 exon
ATTCATCTGCCTCCCATGGGCCTTACCCCACTACGAGGCCGGGGACTTCGAAGCCAGGAGAAACTGAGGAAATTTTCCAAACCAATATATCTCAAATCTCATGATGAAGTTTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018559-'15-11,'15-9,18-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0534710=Complex1_LYR=PD(28.4=61.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAGAATTTTCAGGCTTGC
R:
TTCTCCTGGCTTCGAAGTCCC
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]