DreEX6096527 @ danRer10
Exon Skipping
Gene
ENSDARG00000026281 | lyrm1
Description
LYR motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-210]
Coordinates
chr24:39626045-39626506:-
Coord C1 exon
chr24:39626348-39626506
Coord A exon
chr24:39626200-39626260
Coord C2 exon
chr24:39626045-39626076
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCCACCCCTTTATAGATA
3' ss Score
9.75
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
Exon sequences
Seq C1 exon
AGGGTCCAGATGTCTCGTGCAAATGTGCTGTCTCTGTATCGGCGGGTTCTCCGCATTGCACGCAGCTGGAAGGCTCAGTCTTCAATACCAAAGGACACTGACACTGAGAAGAAATACATCACGCAGGAGGCTCGAACCCTTTTCAGACAGAACCAGCAG
Seq A exon
ATAACAGACCCAGAATCAATCCAGAGATGCATTGAAGAGTGTGAAGCTCGGATAGAAATTG
Seq C2 exon
GTCTGCATTATAGGAACCCCTACCCCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026281-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.032 C2=0.091
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(57.8=100),PF0534710=Complex1_LYR=PU(68.7=86.8)
A:
PF0226314=GBP=FE(22.2=100),PF0534710=Complex1_LYR=PD(28.4=90.5)
C2:
PF0226314=GBP=PD(10.0=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCACGCAGCTGGAAGG
R:
GTCTGGGGTAGGGGTTCCTAT
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]