BtaEX0020945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018559 | LYRM1
Description
LYR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25074]
Coordinates
chr25:18797874-18830437:+
Coord C1 exon
chr25:18797874-18797959
Coord A exon
chr25:18826142-18826300
Coord C2 exon
chr25:18830345-18830437
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGGTGGGTCGGAAGATG
3' ss Score
0.18
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TCAGCTGCGCTCCCGGCGCCGCCTCCTCCCAGCCTGCCGGAGGCTGAGGTGCTTCTGTGGGTGGGGGAAGGCTGGACTGACGCAGA
Seq A exon
ATGACAATGGCAACACGACAAGAAGTTCTTGGCCTCTACCGCAGAATTTTCAGGCTTGCGAAGAAATGGCAGGCTGCATCAGGGCAGATGGAAGACACCATTAAAGAAAAACAGTACATATTAAATGAAGCCAGAACGCTGTTCCAAAAAAACAAAAAT
Seq C2 exon
CTCACAGACACAGACCTGATTAAACAGTGTATAGATGAATGCACAGCCAGGATTGAAATTGGACTTCATTACCAGATTCCTTATCCAAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018559-'3-9,'3-8,15-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0534710=Complex1_LYR=PU(68.7=86.8)
C2:
PF0534710=Complex1_LYR=PD(28.4=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCTGAGGTGCTTCT
R:
CTTGGATAAGGAATCTGGTAATGAAG
Band lengths:
138-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development