DreINT0095026 @ danRer10
Intron Retention
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21215489-21217943:-
Coord C1 exon
chr23:21217815-21217943
Coord A exon
chr23:21215618-21217814
Coord C2 exon
chr23:21215489-21215617
Length
2197 bp
Sequences
Splice sites
5' ss Seq
AACGTAGGA
5' ss Score
3.85
3' ss Seq
TATATATTCATCTCAAACAGCTT
3' ss Score
6.3
Exon sequences
Seq C1 exon
AGTGTCCTCAGGGTTTCTTCGGCCAGAGCTGCCAGCACAGATGCCAGTGTGAGAATGGCGCAGTGTGTGAGCATGTGAGCGGTGCCTGCACTTGTTTGGCTGGCTGGACTGGGACGTATTGTGAAAAAC
Seq A exon
GTAGGAGAAGTAGTTGGTTATGTGCTACCTCTCTCTAAAACTAGTACATTTAATCTGTTTGAGTTTACTCTATAGTGGAGAACAAAATTAGATCAATAAACACTTTATTGATTCATTCATTTTCTTTTCGGCTTAGTCCCTTTAATAATCTGGGGTCGCCACAGCGAAATGAACCGACAATTTATTCAGCGTATGTTTTTACGCAACGGATGCCCTTCCAGCTGCAACTCATCACTGAGAAACACATACACACTTATTCACACACACACTCATACACTACGGCCAATTTTAACACACCCAATTCACCTGTACCGCATGTCTTTGGACTTGTGGTGGAACCCAGAGCACCCGGAAGAAACCCATCGAACACGGGGAGAACATGCAGAACATGCAAGGCTCGAACCAGTGACCTTCTTGCTGTGAGGTGAACGGGCTGCTAACTGCACCACCGCGTTGCCCTTAAACACTTTATACTTTCTGAATAACTTAATTTAACAAAAATTGAAATTTAAAAAATTTAATTGTTTTACAAATGAATCAACAACAACAATTGCAACAAACATGCAGGCCAGACCCGTAAAGTCAAAGTTTTTTGACGCATTAGGGTCATTTGACATATTTCGACATTCCATTTTGATTAATTTTAGATTTGAGGGGATTATGACGGGGCAAAAAAATGAACAAAATCTCACTCATTCATTCATTCGTTCATTGTCCTTTGGCTTAGTCTTTATTTCAGAGCTCGCCATAGCGGAATGAACCCCCAACTATTCGGGCATATGTTTTATGCCGTGGATGCCCTTCTAGCCACAACCCTCATTCACACTCACACTCATACACTACGGTTCACCACCTTTGGACTTTGTGGGAAACCAGAGCACCCGAAGGAAACCCACGCCAACACAGGGAGAACAGCCGAAACTCGAAACAGTAACCTGTTGCTGTGAGGCAACAATGCTAATCACTGAAAAAGGCCCCCAACCCTAAATGCAATTGTCATTGGTTGATGGGATTGTACGAATTCATACGAATTAGCTACTAAATCAAAAAGTTACGAATTGCCATGAGATAGCGTTGTCCCATAACATATGGGATGTTGATCTCTGCTTTGTCTTTTTTTGATGTTGAAAATAAAACTCTACAGTTTATCAGAGTGACTTTTATTGAGATTTAGTAGTCTGAAACAATGTATTCTATAAGAAATAATATGTAAAGAATTAAGGCTGTAAAAAAAAAGTATACCGGCAGTTTATTACCAGCTATTTGCCATGTAGTTTACAATACCAACCCATATAATATATTACTTCCAACTATTAAAAATGTCAGTAATAGTCATTTTATTTCAAGTGCAAATATTGTTGGAGGAAAAATCAAAGTCCCATAATGCAATTCAAAAGCATTAACAATCAACCACTTTTCTTTAGCGTACTTATAAACATTTTTTTTGTCTGTACAGATCTTTAAAAAAATTGTATGTTTTTTATTTTTTATTTATTGGACTATATACTGTATTCTTTTATTTTTTGTTATCCTGCCATGTCTGTGAAGCACTTTGGTCATTATTCATATTGTTTTAAGGTCCTTTACAAATATTGTTGACCTTGATCCTCACCTAATAAATGAAAAATGAAAAAAAAAATAAATAAATAAAACAGGAATCACAGAATTAACCGAAAACTGTTCGTTCGTTCGTTCATTCATTTTCTTTTCAGCTTGTTCCCCTTATTAATCTGGGGTCGCCACAGCAGAATCAACCACCAACTTCCAGCTGCAACCCATTACTGGAAAACACACATACACTCTCATTCACACACATACACTACGGACAATTTAGTTTACCCAATTCACCTGTACCACGTCTTTGAACTTGTGGGGGAAACCAGAGCACCTGGAGGAAACCCACAAGAAAAAGGGGAGGACTGTGTGAGAACTGTCCAAGCTTCTCACTGAAATGCCAACTGACCCAGCTGAGGCTCAAAACAGCAATCTTCTTGCTGTGAGCCGATCGTTCTACCCACTATGCTATTGTGACGCCCAAAACTGTTCATTTACAGATATATTTTCTTCAGAATATGCTACTCATATAATATGTTTATAAAACAGCTCTTTTACTCCTGTAAGCAAACTAAACAATGACCTCAAATATAGGAAATTGTGAGCAAATCTGATCTCCTCTATATATATTCATCTCAAACAG
Seq C2 exon
CTTGTCCTGAGGGCTTTCATGGCTTGGAGTGCCAGCAGAAGTGCCAGTGCTTGAATGGTGGCCGTTGTCATCCCGTGACTGGAGGCTGCCAGTGTCCATCTGGTTGGGTCGGGCCAGTTTGCAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199:ENSDART00000143206:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(33.3=36.4),PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]