GgaINT0134974 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:993335-993707:+
Coord C1 exon
chr21:993335-993463
Coord A exon
chr21:993464-993578
Coord C2 exon
chr21:993579-993707
Length
115 bp
Sequences
Splice sites
5' ss Seq
ACCGTATGT
5' ss Score
6.73
3' ss Seq
GTTTGCTTTGTTCCCCACAGCCT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTTGCCCGGCAGGATGGTTCGGGTTGGGCTGCCGGCGCCGCTGCCAGTGTGAGCACGGGGCTATGTGTGACCACGTCAGTGGGGCATGCACATGTGCTGAGGGCTGGAGGGGGACCTTCTGTGAGCACC
Seq A exon
GTATGTACCCCAAGGCATGGAGTGATCCTCGGGTGTCTGCTCACCCACTGCGCACCCCTAAGAGCCGTCCATTCCTCTTACAGACCCTCTGGGCTGTTTGCTTTGTTCCCCACAG
Seq C2 exon
CCTGCCCAGATGGATTTTATGGCATTGAGTGTCAGCATGCCTGCAACTGCCAGAATGGAGCCCACTGTGACCACATCACTGGGCAGTGCCACTGCCACCCAGGCTGGACTGGGCCCCGCTGCGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4)
A:
NA
C2:
PF079748=EGF_2=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGATGGTTCGGGTT
R:
ACTGCCCAGTGATGTGGTCA
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]